SILENT_MODE BLOCK_FILE jp_QrtjFr1.concise.blc MAX_NSEQ 482 MAX_INPUT_LEN 484 OUTPUT_FILE jp_QrtjFr1.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 154 471 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 472 154 481 H SPACE SUB_CHARS 1 472 154 481 E SPACE SUB_CHARS 1 472 154 481 - SPACE HELIX 5 475 18 COLOUR_TEXT_REGION 5 475 18 475 50 HELIX 51 475 67 COLOUR_TEXT_REGION 51 475 67 475 50 HELIX 77 475 101 COLOUR_TEXT_REGION 77 475 101 475 50 HELIX 113 475 129 COLOUR_TEXT_REGION 113 475 129 475 50 HELIX 136 475 151 COLOUR_TEXT_REGION 136 475 151 475 50 HELIX 6 480 17 COLOUR_TEXT_REGION 6 480 17 480 50 HELIX 37 480 39 COLOUR_TEXT_REGION 37 480 39 480 50 HELIX 51 480 66 COLOUR_TEXT_REGION 51 480 66 480 50 HELIX 77 480 85 COLOUR_TEXT_REGION 77 480 85 480 50 HELIX 87 480 97 COLOUR_TEXT_REGION 87 480 97 480 50 HELIX 113 480 129 COLOUR_TEXT_REGION 113 480 129 480 50 HELIX 136 480 152 COLOUR_TEXT_REGION 136 480 152 480 50 HELIX 4 481 18 COLOUR_TEXT_REGION 4 481 18 481 50 HELIX 51 481 67 COLOUR_TEXT_REGION 51 481 67 481 50 HELIX 76 481 101 COLOUR_TEXT_REGION 76 481 101 481 50 HELIX 113 481 128 COLOUR_TEXT_REGION 113 481 128 481 50 HELIX 137 481 151 COLOUR_TEXT_REGION 137 481 151 481 50