SILENT_MODE BLOCK_FILE jp_qAjnbjB.concise.blc MAX_NSEQ 870 MAX_INPUT_LEN 872 OUTPUT_FILE jp_qAjnbjB.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 124 859 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 860 124 869 H SPACE SUB_CHARS 1 860 124 869 E SPACE SUB_CHARS 1 860 124 869 - SPACE STRAND 3 863 9 COLOUR_TEXT_REGION 3 863 9 863 51 STRAND 31 863 35 COLOUR_TEXT_REGION 31 863 35 863 51 STRAND 59 863 62 COLOUR_TEXT_REGION 59 863 62 863 51 STRAND 88 863 92 COLOUR_TEXT_REGION 88 863 92 863 51 HELIX 15 863 27 COLOUR_TEXT_REGION 15 863 27 863 50 HELIX 44 863 52 COLOUR_TEXT_REGION 44 863 52 863 50 HELIX 57 863 58 COLOUR_TEXT_REGION 57 863 58 863 50 HELIX 71 863 83 COLOUR_TEXT_REGION 71 863 83 863 50 HELIX 106 863 122 COLOUR_TEXT_REGION 106 863 122 863 50 STRAND 2 868 9 COLOUR_TEXT_REGION 2 868 9 868 51 STRAND 31 868 37 COLOUR_TEXT_REGION 31 868 37 868 51 STRAND 58 868 63 COLOUR_TEXT_REGION 58 868 63 868 51 STRAND 87 868 92 COLOUR_TEXT_REGION 87 868 92 868 51 HELIX 15 868 27 COLOUR_TEXT_REGION 15 868 27 868 50 HELIX 44 868 52 COLOUR_TEXT_REGION 44 868 52 868 50 HELIX 71 868 83 COLOUR_TEXT_REGION 71 868 83 868 50 HELIX 107 868 122 COLOUR_TEXT_REGION 107 868 122 868 50 STRAND 3 869 8 COLOUR_TEXT_REGION 3 869 8 869 51 STRAND 88 869 92 COLOUR_TEXT_REGION 88 869 92 869 51 HELIX 15 869 26 COLOUR_TEXT_REGION 15 869 26 869 50 HELIX 28 869 34 COLOUR_TEXT_REGION 28 869 34 869 50 HELIX 45 869 51 COLOUR_TEXT_REGION 45 869 51 869 50 HELIX 55 869 62 COLOUR_TEXT_REGION 55 869 62 869 50 HELIX 71 869 83 COLOUR_TEXT_REGION 71 869 83 869 50 HELIX 106 869 122 COLOUR_TEXT_REGION 106 869 122 869 50