SILENT_MODE
BLOCK_FILE jp_55RQTUT.concise.blc
MAX_NSEQ 91
MAX_INPUT_LEN 93
OUTPUT_FILE jp_55RQTUT.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 137 80   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 81 137 90 H SPACE
SUB_CHARS 1 81 137 90 E SPACE
SUB_CHARS 1 81 137 90 - SPACE
STRAND 4 84 9
COLOUR_TEXT_REGION 4 84 9 84 51
STRAND 11 84 16
COLOUR_TEXT_REGION 11 84 16 84 51
STRAND 25 84 30
COLOUR_TEXT_REGION 25 84 30 84 51
STRAND 38 84 46
COLOUR_TEXT_REGION 38 84 46 84 51
STRAND 58 84 66
COLOUR_TEXT_REGION 58 84 66 84 51
STRAND 73 84 79
COLOUR_TEXT_REGION 73 84 79 84 51
STRAND 92 84 96
COLOUR_TEXT_REGION 92 84 96 84 51
STRAND 107 84 115
COLOUR_TEXT_REGION 107 84 115 84 51
STRAND 122 84 132
COLOUR_TEXT_REGION 122 84 132 84 51
HELIX 100 84 103
COLOUR_TEXT_REGION 100 84 103 84 50
STRAND 4 89 8
COLOUR_TEXT_REGION 4 89 8 89 51
STRAND 12 89 15
COLOUR_TEXT_REGION 12 89 15 89 51
STRAND 25 89 30
COLOUR_TEXT_REGION 25 89 30 89 51
STRAND 38 89 46
COLOUR_TEXT_REGION 38 89 46 89 51
STRAND 58 89 66
COLOUR_TEXT_REGION 58 89 66 89 51
STRAND 73 89 79
COLOUR_TEXT_REGION 73 89 79 89 51
STRAND 92 89 96
COLOUR_TEXT_REGION 92 89 96 89 51
STRAND 107 89 115
COLOUR_TEXT_REGION 107 89 115 89 51
STRAND 122 89 131
COLOUR_TEXT_REGION 122 89 131 89 51
HELIX 100 89 103
COLOUR_TEXT_REGION 100 89 103 89 50
STRAND 4 90 16
COLOUR_TEXT_REGION 4 90 16 90 51
STRAND 25 90 30
COLOUR_TEXT_REGION 25 90 30 90 51
STRAND 39 90 47
COLOUR_TEXT_REGION 39 90 47 90 51
STRAND 59 90 65
COLOUR_TEXT_REGION 59 90 65 90 51
STRAND 72 90 79
COLOUR_TEXT_REGION 72 90 79 90 51
STRAND 92 90 97
COLOUR_TEXT_REGION 92 90 97 90 51
STRAND 107 90 114
COLOUR_TEXT_REGION 107 90 114 90 51
STRAND 123 90 132
COLOUR_TEXT_REGION 123 90 132 90 51
HELIX 101 90 103
COLOUR_TEXT_REGION 101 90 103 90 50