SILENT_MODE
BLOCK_FILE jp_VPKnyv5.concise.blc
MAX_NSEQ 304
MAX_INPUT_LEN 306
OUTPUT_FILE jp_VPKnyv5.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 80 293   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 294 80 303 H SPACE
SUB_CHARS 1 294 80 303 E SPACE
SUB_CHARS 1 294 80 303 - SPACE
STRAND 46 297 49
COLOUR_TEXT_REGION 46 297 49 297 51
STRAND 55 297 62
COLOUR_TEXT_REGION 55 297 62 297 51
STRAND 76 297 78
COLOUR_TEXT_REGION 76 297 78 297 51
HELIX 4 297 10
COLOUR_TEXT_REGION 4 297 10 297 50
HELIX 15 297 39
COLOUR_TEXT_REGION 15 297 39 297 50
HELIX 66 297 71
COLOUR_TEXT_REGION 66 297 71 297 50
STRAND 46 302 48
COLOUR_TEXT_REGION 46 302 48 302 51
STRAND 55 302 61
COLOUR_TEXT_REGION 55 302 61 302 51
STRAND 75 302 78
COLOUR_TEXT_REGION 75 302 78 302 51
HELIX 4 302 9
COLOUR_TEXT_REGION 4 302 9 302 50
HELIX 15 302 38
COLOUR_TEXT_REGION 15 302 38 302 50
HELIX 65 302 71
COLOUR_TEXT_REGION 65 302 71 302 50
STRAND 46 303 49
COLOUR_TEXT_REGION 46 303 49 303 51
STRAND 56 303 62
COLOUR_TEXT_REGION 56 303 62 303 51
STRAND 77 303 78
COLOUR_TEXT_REGION 77 303 78 303 51
HELIX 3 303 10
COLOUR_TEXT_REGION 3 303 10 303 50
HELIX 15 303 39
COLOUR_TEXT_REGION 15 303 39 303 50
HELIX 68 303 71
COLOUR_TEXT_REGION 68 303 71 303 50