QUERY           : KTCENLADTFRGPCFTDGSCDDHCKNKEHLIKGRCRDDFRCWCTRNC : QUERY 
UniRef90_Q29ZQ8 : -TCENLANTYRGPCF--GGCDFHCKTKEHLLSGRCRDDFRCWCTRNC : UniRef90_Q29ZQ8
UniRef90_B3F051 : KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC : UniRef90_B3F051
UniRef90_Q5YLG8 : KTCENLADKYRGPCF--SGCDTHCTTKENAVSGRCRDDFRCWCTKRC : UniRef90_Q5YLG8
UniRef90_G7KHX5 : -VCMSLSGTFNGPPFMNNRCDKSCKNKEHKYYGKCWQDLRCWCYGEC : UniRef90_G7KHX5
UniRef90_Q01783 : -TCENLAGSYKGVCF--GGCDRHCRTQEGAISGRCRDDFRCWCTKNC : UniRef90_Q01783
UniRef90_Q01784 : -TCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCH-DWKCFCTQNC : UniRef90_Q01784
UniRef90_G7IJT7 : ---EKLSATFKGPCFLRSRCNKYCKNKQHAFSGRCWDDFRCWCLRQ- : UniRef90_G7IJT7
UniRef90_C7IZB5 : KICHDHSQTFKGMCFHTSNCIACCTN-EGYTGGYCKPTYRCMCTKDC : UniRef90_C7IZB5

                : 1---------11--------21--------31--------41----- :
OrigSeq         : KTCENLADTFRGPCFTDGSCDDHCKNKEHLIKGRCRDDFRCWCTRNC : OrigSeq

Jnet            : ---HH--------------------H----EEEE------EEE---- : Jnet
jhmm            : ---HH-------------------------EEEEE-----EEE---- : jhmm
jpssm           : -HHH-----------------HHHHHHHHHH--------EEEE---- : jpssm

Lupas 14        : ----------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------- : Lupas 28

Jnet_25         : --B--BB--B-BBBB----B--BB-----BB-B-B---B-BBB---B : Jnet_25
Jnet_5          : --B--------B-------B---B----------B---B-B-B---- : Jnet_5
Jnet_0          : ----------------------------------------B------ : Jnet_0
Jnet Rel        : 61121134456777777766433320011122121776321205899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.