SILENT_MODE BLOCK_FILE jp_A1XIY0M.concise.blc MAX_NSEQ 581 MAX_INPUT_LEN 583 OUTPUT_FILE jp_A1XIY0M.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 131 570 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 571 131 580 H SPACE SUB_CHARS 1 571 131 580 E SPACE SUB_CHARS 1 571 131 580 - SPACE STRAND 17 574 23 COLOUR_TEXT_REGION 17 574 23 574 51 STRAND 34 574 39 COLOUR_TEXT_REGION 34 574 39 574 51 STRAND 52 574 60 COLOUR_TEXT_REGION 52 574 60 574 51 STRAND 65 574 70 COLOUR_TEXT_REGION 65 574 70 574 51 STRAND 74 574 75 COLOUR_TEXT_REGION 74 574 75 574 51 STRAND 96 574 102 COLOUR_TEXT_REGION 96 574 102 574 51 STRAND 108 574 114 COLOUR_TEXT_REGION 108 574 114 574 51 STRAND 123 574 129 COLOUR_TEXT_REGION 123 574 129 574 51 HELIX 6 574 6 COLOUR_TEXT_REGION 6 574 6 574 50 STRAND 17 579 23 COLOUR_TEXT_REGION 17 579 23 579 51 STRAND 34 579 39 COLOUR_TEXT_REGION 34 579 39 579 51 STRAND 52 579 60 COLOUR_TEXT_REGION 52 579 60 579 51 STRAND 65 579 70 COLOUR_TEXT_REGION 65 579 70 579 51 STRAND 74 579 75 COLOUR_TEXT_REGION 74 579 75 579 51 STRAND 96 579 102 COLOUR_TEXT_REGION 96 579 102 579 51 STRAND 108 579 114 COLOUR_TEXT_REGION 108 579 114 579 51 STRAND 120 579 129 COLOUR_TEXT_REGION 120 579 129 579 51 STRAND 17 580 23 COLOUR_TEXT_REGION 17 580 23 580 51 STRAND 33 580 39 COLOUR_TEXT_REGION 33 580 39 580 51 STRAND 52 580 61 COLOUR_TEXT_REGION 52 580 61 580 51 STRAND 66 580 71 COLOUR_TEXT_REGION 66 580 71 580 51 STRAND 73 580 75 COLOUR_TEXT_REGION 73 580 75 580 51 STRAND 96 580 102 COLOUR_TEXT_REGION 96 580 102 580 51 STRAND 108 580 115 COLOUR_TEXT_REGION 108 580 115 580 51 STRAND 124 580 129 COLOUR_TEXT_REGION 124 580 129 580 51 HELIX 4 580 7 COLOUR_TEXT_REGION 4 580 7 580 50