SILENT_MODE BLOCK_FILE jp_X5PjINC.concise.blc MAX_NSEQ 516 MAX_INPUT_LEN 518 OUTPUT_FILE jp_X5PjINC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 124 505 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 506 124 515 H SPACE SUB_CHARS 1 506 124 515 E SPACE SUB_CHARS 1 506 124 515 - SPACE STRAND 8 509 15 COLOUR_TEXT_REGION 8 509 15 509 51 STRAND 22 509 24 COLOUR_TEXT_REGION 22 509 24 509 51 STRAND 32 509 37 COLOUR_TEXT_REGION 32 509 37 509 51 STRAND 40 509 48 COLOUR_TEXT_REGION 40 509 48 509 51 STRAND 55 509 59 COLOUR_TEXT_REGION 55 509 59 509 51 STRAND 66 509 73 COLOUR_TEXT_REGION 66 509 73 509 51 STRAND 79 509 86 COLOUR_TEXT_REGION 79 509 86 509 51 STRAND 93 509 101 COLOUR_TEXT_REGION 93 509 101 509 51 STRAND 109 509 116 COLOUR_TEXT_REGION 109 509 116 509 51 STRAND 7 514 15 COLOUR_TEXT_REGION 7 514 15 514 51 STRAND 21 514 24 COLOUR_TEXT_REGION 21 514 24 514 51 STRAND 32 514 37 COLOUR_TEXT_REGION 32 514 37 514 51 STRAND 40 514 48 COLOUR_TEXT_REGION 40 514 48 514 51 STRAND 56 514 59 COLOUR_TEXT_REGION 56 514 59 514 51 STRAND 65 514 73 COLOUR_TEXT_REGION 65 514 73 514 51 STRAND 79 514 85 COLOUR_TEXT_REGION 79 514 85 514 51 STRAND 93 514 101 COLOUR_TEXT_REGION 93 514 101 514 51 STRAND 109 514 116 COLOUR_TEXT_REGION 109 514 116 514 51 STRAND 11 515 15 COLOUR_TEXT_REGION 11 515 15 515 51 STRAND 22 515 23 COLOUR_TEXT_REGION 22 515 23 515 51 STRAND 32 515 37 COLOUR_TEXT_REGION 32 515 37 515 51 STRAND 40 515 47 COLOUR_TEXT_REGION 40 515 47 515 51 STRAND 54 515 58 COLOUR_TEXT_REGION 54 515 58 515 51 STRAND 68 515 72 COLOUR_TEXT_REGION 68 515 72 515 51 STRAND 79 515 86 COLOUR_TEXT_REGION 79 515 86 515 51 STRAND 93 515 102 COLOUR_TEXT_REGION 93 515 102 515 51 STRAND 109 515 116 COLOUR_TEXT_REGION 109 515 116 515 51