SILENT_MODE BLOCK_FILE jp_zDfaeBp.concise.blc MAX_NSEQ 661 MAX_INPUT_LEN 663 OUTPUT_FILE jp_zDfaeBp.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 87 650 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 651 87 660 H SPACE SUB_CHARS 1 651 87 660 E SPACE SUB_CHARS 1 651 87 660 - SPACE STRAND 4 654 8 COLOUR_TEXT_REGION 4 654 8 654 51 STRAND 52 654 56 COLOUR_TEXT_REGION 52 654 56 654 51 STRAND 61 654 66 COLOUR_TEXT_REGION 61 654 66 654 51 STRAND 71 654 76 COLOUR_TEXT_REGION 71 654 76 654 51 STRAND 79 654 84 COLOUR_TEXT_REGION 79 654 84 654 51 HELIX 13 654 29 COLOUR_TEXT_REGION 13 654 29 654 50 HELIX 34 654 47 COLOUR_TEXT_REGION 34 654 47 654 50 STRAND 4 659 8 COLOUR_TEXT_REGION 4 659 8 659 51 STRAND 53 659 56 COLOUR_TEXT_REGION 53 659 56 659 51 STRAND 61 659 66 COLOUR_TEXT_REGION 61 659 66 659 51 STRAND 71 659 76 COLOUR_TEXT_REGION 71 659 76 659 51 STRAND 79 659 85 COLOUR_TEXT_REGION 79 659 85 659 51 HELIX 13 659 29 COLOUR_TEXT_REGION 13 659 29 659 50 HELIX 33 659 47 COLOUR_TEXT_REGION 33 659 47 659 50 STRAND 4 660 8 COLOUR_TEXT_REGION 4 660 8 660 51 STRAND 52 660 56 COLOUR_TEXT_REGION 52 660 56 660 51 STRAND 62 660 66 COLOUR_TEXT_REGION 62 660 66 660 51 STRAND 71 660 76 COLOUR_TEXT_REGION 71 660 76 660 51 STRAND 80 660 84 COLOUR_TEXT_REGION 80 660 84 660 51 HELIX 13 660 29 COLOUR_TEXT_REGION 13 660 29 660 50 HELIX 34 660 46 COLOUR_TEXT_REGION 34 660 46 660 50