SILENT_MODE BLOCK_FILE jp_TJqga6B.concise.blc MAX_NSEQ 936 MAX_INPUT_LEN 938 OUTPUT_FILE jp_TJqga6B.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 158 925 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 926 158 935 H SPACE SUB_CHARS 1 926 158 935 E SPACE SUB_CHARS 1 926 158 935 - SPACE STRAND 8 929 13 COLOUR_TEXT_REGION 8 929 13 929 51 STRAND 39 929 44 COLOUR_TEXT_REGION 39 929 44 929 51 STRAND 108 929 112 COLOUR_TEXT_REGION 108 929 112 929 51 HELIX 19 929 32 COLOUR_TEXT_REGION 19 929 32 929 50 HELIX 57 929 65 COLOUR_TEXT_REGION 57 929 65 929 50 HELIX 79 929 88 COLOUR_TEXT_REGION 79 929 88 929 50 HELIX 93 929 101 COLOUR_TEXT_REGION 93 929 101 929 50 HELIX 131 929 153 COLOUR_TEXT_REGION 131 929 153 929 50 STRAND 8 934 13 COLOUR_TEXT_REGION 8 934 13 934 51 STRAND 39 934 45 COLOUR_TEXT_REGION 39 934 45 934 51 STRAND 88 934 90 COLOUR_TEXT_REGION 88 934 90 934 51 STRAND 109 934 112 COLOUR_TEXT_REGION 109 934 112 934 51 HELIX 19 934 33 COLOUR_TEXT_REGION 19 934 33 934 50 HELIX 57 934 65 COLOUR_TEXT_REGION 57 934 65 934 50 HELIX 81 934 81 COLOUR_TEXT_REGION 81 934 81 934 50 HELIX 95 934 101 COLOUR_TEXT_REGION 95 934 101 934 50 HELIX 131 934 153 COLOUR_TEXT_REGION 131 934 153 934 50 STRAND 8 935 13 COLOUR_TEXT_REGION 8 935 13 935 51 STRAND 39 935 43 COLOUR_TEXT_REGION 39 935 43 935 51 STRAND 108 935 112 COLOUR_TEXT_REGION 108 935 112 935 51 HELIX 19 935 31 COLOUR_TEXT_REGION 19 935 31 935 50 HELIX 56 935 65 COLOUR_TEXT_REGION 56 935 65 935 50 HELIX 79 935 88 COLOUR_TEXT_REGION 79 935 88 935 50 HELIX 92 935 101 COLOUR_TEXT_REGION 92 935 101 935 50 HELIX 130 935 153 COLOUR_TEXT_REGION 130 935 153 935 50