SILENT_MODE
BLOCK_FILE jp_BE3rElu.concise.blc
MAX_NSEQ 368
MAX_INPUT_LEN 370
OUTPUT_FILE jp_BE3rElu.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 125 357   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 358 125 367 H SPACE
SUB_CHARS 1 358 125 367 E SPACE
SUB_CHARS 1 358 125 367 - SPACE
STRAND 37 361 44
COLOUR_TEXT_REGION 37 361 44 361 51
STRAND 50 361 55
COLOUR_TEXT_REGION 50 361 55 361 51
STRAND 59 361 64
COLOUR_TEXT_REGION 59 361 64 361 51
STRAND 69 361 72
COLOUR_TEXT_REGION 69 361 72 361 51
STRAND 78 361 83
COLOUR_TEXT_REGION 78 361 83 361 51
STRAND 88 361 91
COLOUR_TEXT_REGION 88 361 91 361 51
HELIX 3 361 14
COLOUR_TEXT_REGION 3 361 14 361 50
HELIX 99 361 118
COLOUR_TEXT_REGION 99 361 118 361 50
STRAND 37 366 44
COLOUR_TEXT_REGION 37 366 44 366 51
STRAND 50 366 55
COLOUR_TEXT_REGION 50 366 55 366 51
STRAND 59 366 64
COLOUR_TEXT_REGION 59 366 64 366 51
STRAND 69 366 72
COLOUR_TEXT_REGION 69 366 72 366 51
STRAND 78 366 83
COLOUR_TEXT_REGION 78 366 83 366 51
STRAND 88 366 92
COLOUR_TEXT_REGION 88 366 92 366 51
HELIX 3 366 13
COLOUR_TEXT_REGION 3 366 13 366 50
HELIX 99 366 118
COLOUR_TEXT_REGION 99 366 118 366 50
STRAND 37 367 43
COLOUR_TEXT_REGION 37 367 43 367 51
STRAND 51 367 55
COLOUR_TEXT_REGION 51 367 55 367 51
STRAND 59 367 64
COLOUR_TEXT_REGION 59 367 64 367 51
STRAND 69 367 72
COLOUR_TEXT_REGION 69 367 72 367 51
STRAND 78 367 83
COLOUR_TEXT_REGION 78 367 83 367 51
STRAND 90 367 91
COLOUR_TEXT_REGION 90 367 91 367 51
HELIX 2 367 16
COLOUR_TEXT_REGION 2 367 16 367 50
HELIX 98 367 118
COLOUR_TEXT_REGION 98 367 118 367 50