SILENT_MODE
BLOCK_FILE jp_9PD_tbr.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_9PD_tbr.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 118 18   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 19 118 28 H SPACE
SUB_CHARS 1 19 118 28 E SPACE
SUB_CHARS 1 19 118 28 - SPACE
STRAND 43 22 45
COLOUR_TEXT_REGION 43 22 45 22 51
STRAND 71 22 74
COLOUR_TEXT_REGION 71 22 74 22 51
HELIX 5 22 7
COLOUR_TEXT_REGION 5 22 7 22 50
HELIX 9 22 19
COLOUR_TEXT_REGION 9 22 19 22 50
HELIX 24 22 39
COLOUR_TEXT_REGION 24 22 39 22 50
HELIX 50 22 63
COLOUR_TEXT_REGION 50 22 63 22 50
HELIX 87 22 98
COLOUR_TEXT_REGION 87 22 98 22 50
HELIX 107 22 116
COLOUR_TEXT_REGION 107 22 116 22 50
STRAND 43 27 45
COLOUR_TEXT_REGION 43 27 45 27 51
STRAND 71 27 75
COLOUR_TEXT_REGION 71 27 75 27 51
HELIX 5 27 15
COLOUR_TEXT_REGION 5 27 15 27 50
HELIX 17 27 19
COLOUR_TEXT_REGION 17 27 19 27 50
HELIX 23 27 39
COLOUR_TEXT_REGION 23 27 39 27 50
HELIX 49 27 64
COLOUR_TEXT_REGION 49 27 64 27 50
HELIX 87 27 99
COLOUR_TEXT_REGION 87 27 99 27 50
HELIX 107 27 116
COLOUR_TEXT_REGION 107 27 116 27 50
STRAND 25 28 27
COLOUR_TEXT_REGION 25 28 27 28 51
STRAND 43 28 45
COLOUR_TEXT_REGION 43 28 45 28 51
STRAND 50 28 52
COLOUR_TEXT_REGION 50 28 52 28 51
STRAND 95 28 97
COLOUR_TEXT_REGION 95 28 97 28 51
HELIX 10 28 20
COLOUR_TEXT_REGION 10 28 20 28 50
HELIX 30 28 39
COLOUR_TEXT_REGION 30 28 39 28 50
HELIX 55 28 63
COLOUR_TEXT_REGION 55 28 63 28 50
HELIX 71 28 72
COLOUR_TEXT_REGION 71 28 72 28 50
HELIX 87 28 94
COLOUR_TEXT_REGION 87 28 94 28 50
HELIX 107 28 114
COLOUR_TEXT_REGION 107 28 114 28 50