SILENT_MODE BLOCK_FILE jp_RUTfsrb.concise.blc MAX_NSEQ 639 MAX_INPUT_LEN 641 OUTPUT_FILE jp_RUTfsrb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 206 628 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 629 206 638 H SPACE SUB_CHARS 1 629 206 638 E SPACE SUB_CHARS 1 629 206 638 - SPACE HELIX 17 632 33 COLOUR_TEXT_REGION 17 632 33 632 50 HELIX 37 632 58 COLOUR_TEXT_REGION 37 632 58 632 50 HELIX 65 632 77 COLOUR_TEXT_REGION 65 632 77 632 50 HELIX 87 632 109 COLOUR_TEXT_REGION 87 632 109 632 50 HELIX 121 632 133 COLOUR_TEXT_REGION 121 632 133 632 50 HELIX 139 632 151 COLOUR_TEXT_REGION 139 632 151 632 50 HELIX 155 632 162 COLOUR_TEXT_REGION 155 632 162 632 50 HELIX 170 632 198 COLOUR_TEXT_REGION 170 632 198 632 50 HELIX 17 637 33 COLOUR_TEXT_REGION 17 637 33 637 50 HELIX 38 637 58 COLOUR_TEXT_REGION 38 637 58 637 50 HELIX 65 637 76 COLOUR_TEXT_REGION 65 637 76 637 50 HELIX 87 637 109 COLOUR_TEXT_REGION 87 637 109 637 50 HELIX 121 637 133 COLOUR_TEXT_REGION 121 637 133 637 50 HELIX 139 637 151 COLOUR_TEXT_REGION 139 637 151 637 50 HELIX 155 637 162 COLOUR_TEXT_REGION 155 637 162 637 50 HELIX 170 637 197 COLOUR_TEXT_REGION 170 637 197 637 50 HELIX 17 638 34 COLOUR_TEXT_REGION 17 638 34 638 50 HELIX 36 638 58 COLOUR_TEXT_REGION 36 638 58 638 50 HELIX 67 638 77 COLOUR_TEXT_REGION 67 638 77 638 50 HELIX 89 638 109 COLOUR_TEXT_REGION 89 638 109 638 50 HELIX 120 638 132 COLOUR_TEXT_REGION 120 638 132 638 50 HELIX 139 638 152 COLOUR_TEXT_REGION 139 638 152 638 50 HELIX 155 638 162 COLOUR_TEXT_REGION 155 638 162 638 50 HELIX 170 638 198 COLOUR_TEXT_REGION 170 638 198 638 50