SILENT_MODE
BLOCK_FILE jp_HKChYzb.concise.blc
MAX_NSEQ 871
MAX_INPUT_LEN 873
OUTPUT_FILE jp_HKChYzb.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 143 860   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 861 143 870 H SPACE
SUB_CHARS 1 861 143 870 E SPACE
SUB_CHARS 1 861 143 870 - SPACE
STRAND 4 864 9
COLOUR_TEXT_REGION 4 864 9 864 51
STRAND 26 864 30
COLOUR_TEXT_REGION 26 864 30 864 51
STRAND 48 864 54
COLOUR_TEXT_REGION 48 864 54 864 51
STRAND 74 864 77
COLOUR_TEXT_REGION 74 864 77 864 51
STRAND 106 864 111
COLOUR_TEXT_REGION 106 864 111 864 51
STRAND 137 864 141
COLOUR_TEXT_REGION 137 864 141 864 51
HELIX 16 864 20
COLOUR_TEXT_REGION 16 864 20 864 50
HELIX 31 864 42
COLOUR_TEXT_REGION 31 864 42 864 50
HELIX 62 864 69
COLOUR_TEXT_REGION 62 864 69 864 50
HELIX 84 864 96
COLOUR_TEXT_REGION 84 864 96 864 50
HELIX 116 864 131
COLOUR_TEXT_REGION 116 864 131 864 50
STRAND 4 869 9
COLOUR_TEXT_REGION 4 869 9 869 51
STRAND 26 869 30
COLOUR_TEXT_REGION 26 869 30 869 51
STRAND 49 869 54
COLOUR_TEXT_REGION 49 869 54 869 51
STRAND 74 869 77
COLOUR_TEXT_REGION 74 869 77 869 51
STRAND 106 869 112
COLOUR_TEXT_REGION 106 869 112 869 51
STRAND 138 869 141
COLOUR_TEXT_REGION 138 869 141 869 51
HELIX 17 869 21
COLOUR_TEXT_REGION 17 869 21 869 50
HELIX 31 869 43
COLOUR_TEXT_REGION 31 869 43 869 50
HELIX 62 869 70
COLOUR_TEXT_REGION 62 869 70 869 50
HELIX 84 869 96
COLOUR_TEXT_REGION 84 869 96 869 50
HELIX 116 869 132
COLOUR_TEXT_REGION 116 869 132 869 50
STRAND 4 870 8
COLOUR_TEXT_REGION 4 870 8 870 51
STRAND 26 870 30
COLOUR_TEXT_REGION 26 870 30 870 51
STRAND 47 870 54
COLOUR_TEXT_REGION 47 870 54 870 51
STRAND 74 870 77
COLOUR_TEXT_REGION 74 870 77 870 51
STRAND 106 870 111
COLOUR_TEXT_REGION 106 870 111 870 51
STRAND 137 870 141
COLOUR_TEXT_REGION 137 870 141 870 51
HELIX 15 870 20
COLOUR_TEXT_REGION 15 870 20 870 50
HELIX 32 870 42
COLOUR_TEXT_REGION 32 870 42 870 50
HELIX 62 870 69
COLOUR_TEXT_REGION 62 870 69 870 50
HELIX 85 870 97
COLOUR_TEXT_REGION 85 870 97 870 50
HELIX 116 870 130
COLOUR_TEXT_REGION 116 870 130 870 50