SILENT_MODE BLOCK_FILE jp_MI4d6PR.concise.blc MAX_NSEQ 612 MAX_INPUT_LEN 614 OUTPUT_FILE jp_MI4d6PR.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 153 601 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 602 153 611 H SPACE SUB_CHARS 1 602 153 611 E SPACE SUB_CHARS 1 602 153 611 - SPACE HELIX 0 605 6 COLOUR_TEXT_REGION 0 605 6 605 50 HELIX 11 605 39 COLOUR_TEXT_REGION 11 605 39 605 50 HELIX 49 605 76 COLOUR_TEXT_REGION 49 605 76 605 50 HELIX 83 605 107 COLOUR_TEXT_REGION 83 605 107 605 50 HELIX 117 605 127 COLOUR_TEXT_REGION 117 605 127 605 50 HELIX 134 605 150 COLOUR_TEXT_REGION 134 605 150 605 50 HELIX 0 610 6 COLOUR_TEXT_REGION 0 610 6 610 50 HELIX 11 610 39 COLOUR_TEXT_REGION 11 610 39 610 50 HELIX 42 610 44 COLOUR_TEXT_REGION 42 610 44 610 50 HELIX 50 610 76 COLOUR_TEXT_REGION 50 610 76 610 50 HELIX 82 610 107 COLOUR_TEXT_REGION 82 610 107 610 50 HELIX 117 610 126 COLOUR_TEXT_REGION 117 610 126 610 50 HELIX 134 610 151 COLOUR_TEXT_REGION 134 610 151 610 50 HELIX 0 611 7 COLOUR_TEXT_REGION 0 611 7 611 50 HELIX 11 611 39 COLOUR_TEXT_REGION 11 611 39 611 50 HELIX 49 611 75 COLOUR_TEXT_REGION 49 611 75 611 50 HELIX 87 611 107 COLOUR_TEXT_REGION 87 611 107 611 50 HELIX 117 611 129 COLOUR_TEXT_REGION 117 611 129 611 50 HELIX 135 611 149 COLOUR_TEXT_REGION 135 611 149 611 50