SILENT_MODE
BLOCK_FILE jp_8h8C3T6.concise.blc
MAX_NSEQ 801
MAX_INPUT_LEN 803
OUTPUT_FILE jp_8h8C3T6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 146 790   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 791 146 800 H SPACE
SUB_CHARS 1 791 146 800 E SPACE
SUB_CHARS 1 791 146 800 - SPACE
STRAND 3 794 7
COLOUR_TEXT_REGION 3 794 7 794 51
STRAND 38 794 42
COLOUR_TEXT_REGION 38 794 42 794 51
STRAND 79 794 82
COLOUR_TEXT_REGION 79 794 82 794 51
STRAND 93 794 97
COLOUR_TEXT_REGION 93 794 97 794 51
STRAND 111 794 115
COLOUR_TEXT_REGION 111 794 115 794 51
STRAND 142 794 142
COLOUR_TEXT_REGION 142 794 142 794 51
HELIX 17 794 34
COLOUR_TEXT_REGION 17 794 34 794 50
HELIX 45 794 55
COLOUR_TEXT_REGION 45 794 55 794 50
HELIX 120 794 135
COLOUR_TEXT_REGION 120 794 135 794 50
STRAND 3 799 7
COLOUR_TEXT_REGION 3 799 7 799 51
STRAND 37 799 42
COLOUR_TEXT_REGION 37 799 42 799 51
STRAND 79 799 82
COLOUR_TEXT_REGION 79 799 82 799 51
STRAND 94 799 97
COLOUR_TEXT_REGION 94 799 97 799 51
STRAND 111 799 116
COLOUR_TEXT_REGION 111 799 116 799 51
STRAND 141 799 142
COLOUR_TEXT_REGION 141 799 142 799 51
HELIX 17 799 34
COLOUR_TEXT_REGION 17 799 34 799 50
HELIX 45 799 54
COLOUR_TEXT_REGION 45 799 54 799 50
HELIX 120 799 135
COLOUR_TEXT_REGION 120 799 135 799 50
STRAND 3 800 7
COLOUR_TEXT_REGION 3 800 7 800 51
STRAND 38 800 41
COLOUR_TEXT_REGION 38 800 41 800 51
STRAND 79 800 82
COLOUR_TEXT_REGION 79 800 82 800 51
STRAND 93 800 98
COLOUR_TEXT_REGION 93 800 98 800 51
STRAND 110 800 115
COLOUR_TEXT_REGION 110 800 115 800 51
STRAND 142 800 143
COLOUR_TEXT_REGION 142 800 143 800 51
HELIX 17 800 34
COLOUR_TEXT_REGION 17 800 34 800 50
HELIX 45 800 56
COLOUR_TEXT_REGION 45 800 56 800 50
HELIX 120 800 135
COLOUR_TEXT_REGION 120 800 135 800 50