SILENT_MODE BLOCK_FILE jp_3i3gkTL.concise.blc MAX_NSEQ 723 MAX_INPUT_LEN 725 OUTPUT_FILE jp_3i3gkTL.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 208 712 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 713 208 722 H SPACE SUB_CHARS 1 713 208 722 E SPACE SUB_CHARS 1 713 208 722 - SPACE STRAND 4 716 8 COLOUR_TEXT_REGION 4 716 8 716 51 STRAND 62 716 68 COLOUR_TEXT_REGION 62 716 68 716 51 STRAND 73 716 78 COLOUR_TEXT_REGION 73 716 78 716 51 STRAND 127 716 128 COLOUR_TEXT_REGION 127 716 128 716 51 STRAND 132 716 138 COLOUR_TEXT_REGION 132 716 138 716 51 STRAND 145 716 150 COLOUR_TEXT_REGION 145 716 150 716 51 STRAND 155 716 160 COLOUR_TEXT_REGION 155 716 160 716 51 STRAND 170 716 175 COLOUR_TEXT_REGION 170 716 175 716 51 STRAND 202 716 206 COLOUR_TEXT_REGION 202 716 206 716 51 HELIX 9 716 21 COLOUR_TEXT_REGION 9 716 21 716 50 HELIX 28 716 48 COLOUR_TEXT_REGION 28 716 48 716 50 HELIX 85 716 96 COLOUR_TEXT_REGION 85 716 96 716 50 HELIX 100 716 107 COLOUR_TEXT_REGION 100 716 107 716 50 HELIX 121 716 126 COLOUR_TEXT_REGION 121 716 126 716 50 HELIX 180 716 182 COLOUR_TEXT_REGION 180 716 182 716 50 HELIX 185 716 195 COLOUR_TEXT_REGION 185 716 195 716 50 STRAND 3 721 9 COLOUR_TEXT_REGION 3 721 9 721 51 STRAND 28 721 28 COLOUR_TEXT_REGION 28 721 28 721 51 STRAND 62 721 68 COLOUR_TEXT_REGION 62 721 68 721 51 STRAND 73 721 78 COLOUR_TEXT_REGION 73 721 78 721 51 STRAND 127 721 129 COLOUR_TEXT_REGION 127 721 129 721 51 STRAND 132 721 139 COLOUR_TEXT_REGION 132 721 139 721 51 STRAND 145 721 150 COLOUR_TEXT_REGION 145 721 150 721 51 STRAND 155 721 160 COLOUR_TEXT_REGION 155 721 160 721 51 STRAND 169 721 175 COLOUR_TEXT_REGION 169 721 175 721 51 STRAND 202 721 206 COLOUR_TEXT_REGION 202 721 206 721 51 HELIX 13 721 20 COLOUR_TEXT_REGION 13 721 20 721 50 HELIX 29 721 48 COLOUR_TEXT_REGION 29 721 48 721 50 HELIX 85 721 96 COLOUR_TEXT_REGION 85 721 96 721 50 HELIX 100 721 108 COLOUR_TEXT_REGION 100 721 108 721 50 HELIX 121 721 126 COLOUR_TEXT_REGION 121 721 126 721 50 HELIX 179 721 182 COLOUR_TEXT_REGION 179 721 182 721 50 HELIX 185 721 195 COLOUR_TEXT_REGION 185 721 195 721 50 STRAND 62 722 67 COLOUR_TEXT_REGION 62 722 67 722 51 STRAND 73 722 76 COLOUR_TEXT_REGION 73 722 76 722 51 STRAND 96 722 96 COLOUR_TEXT_REGION 96 722 96 722 51 STRAND 132 722 137 COLOUR_TEXT_REGION 132 722 137 722 51 STRAND 144 722 150 COLOUR_TEXT_REGION 144 722 150 722 51 STRAND 156 722 160 COLOUR_TEXT_REGION 156 722 160 722 51 STRAND 171 722 175 COLOUR_TEXT_REGION 171 722 175 722 51 STRAND 199 722 199 COLOUR_TEXT_REGION 199 722 199 722 51 STRAND 202 722 206 COLOUR_TEXT_REGION 202 722 206 722 51 HELIX 7 722 21 COLOUR_TEXT_REGION 7 722 21 722 50 HELIX 28 722 35 COLOUR_TEXT_REGION 28 722 35 722 50 HELIX 38 722 48 COLOUR_TEXT_REGION 38 722 48 722 50 HELIX 77 722 81 COLOUR_TEXT_REGION 77 722 81 722 50 HELIX 85 722 91 COLOUR_TEXT_REGION 85 722 91 722 50 HELIX 100 722 106 COLOUR_TEXT_REGION 100 722 106 722 50 HELIX 115 722 126 COLOUR_TEXT_REGION 115 722 126 722 50 HELIX 181 722 182 COLOUR_TEXT_REGION 181 722 182 722 50 HELIX 185 722 195 COLOUR_TEXT_REGION 185 722 195 722 50