SILENT_MODE
BLOCK_FILE jp_M0Pszjf.concise.blc
MAX_NSEQ 101
MAX_INPUT_LEN 103
OUTPUT_FILE jp_M0Pszjf.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 389 90   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 91 389 100 H SPACE
SUB_CHARS 1 91 389 100 E SPACE
SUB_CHARS 1 91 389 100 - SPACE
STRAND 3 94 9
COLOUR_TEXT_REGION 3 94 9 94 51
STRAND 41 94 48
COLOUR_TEXT_REGION 41 94 48 94 51
STRAND 54 94 60
COLOUR_TEXT_REGION 54 94 60 94 51
STRAND 113 94 119
COLOUR_TEXT_REGION 113 94 119 94 51
STRAND 126 94 131
COLOUR_TEXT_REGION 126 94 131 94 51
STRAND 167 94 174
COLOUR_TEXT_REGION 167 94 174 94 51
STRAND 178 94 182
COLOUR_TEXT_REGION 178 94 182 94 51
STRAND 200 94 207
COLOUR_TEXT_REGION 200 94 207 94 51
STRAND 213 94 219
COLOUR_TEXT_REGION 213 94 219 94 51
STRAND 229 94 229
COLOUR_TEXT_REGION 229 94 229 94 51
STRAND 236 94 241
COLOUR_TEXT_REGION 236 94 241 94 51
STRAND 275 94 277
COLOUR_TEXT_REGION 275 94 277 94 51
STRAND 303 94 308
COLOUR_TEXT_REGION 303 94 308 94 51
STRAND 314 94 316
COLOUR_TEXT_REGION 314 94 316 94 51
HELIX 23 94 37
COLOUR_TEXT_REGION 23 94 37 94 50
HELIX 68 94 88
COLOUR_TEXT_REGION 68 94 88 94 50
HELIX 139 94 147
COLOUR_TEXT_REGION 139 94 147 94 50
HELIX 187 94 194
COLOUR_TEXT_REGION 187 94 194 94 50
HELIX 220 94 228
COLOUR_TEXT_REGION 220 94 228 94 50
HELIX 247 94 255
COLOUR_TEXT_REGION 247 94 255 94 50
HELIX 261 94 266
COLOUR_TEXT_REGION 261 94 266 94 50
HELIX 301 94 302
COLOUR_TEXT_REGION 301 94 302 94 50
HELIX 326 94 342
COLOUR_TEXT_REGION 326 94 342 94 50
HELIX 362 94 376
COLOUR_TEXT_REGION 362 94 376 94 50
HELIX 382 94 385
COLOUR_TEXT_REGION 382 94 385 94 50
STRAND 3 99 8
COLOUR_TEXT_REGION 3 99 8 99 51
STRAND 41 99 44
COLOUR_TEXT_REGION 41 99 44 99 51
STRAND 54 99 61
COLOUR_TEXT_REGION 54 99 61 99 51
STRAND 113 99 119
COLOUR_TEXT_REGION 113 99 119 99 51
STRAND 126 99 131
COLOUR_TEXT_REGION 126 99 131 99 51
STRAND 167 99 173
COLOUR_TEXT_REGION 167 99 173 99 51
STRAND 178 99 182
COLOUR_TEXT_REGION 178 99 182 99 51
STRAND 201 99 207
COLOUR_TEXT_REGION 201 99 207 99 51
STRAND 213 99 218
COLOUR_TEXT_REGION 213 99 218 99 51
STRAND 235 99 241
COLOUR_TEXT_REGION 235 99 241 99 51
STRAND 261 99 263
COLOUR_TEXT_REGION 261 99 263 99 51
STRAND 277 99 278
COLOUR_TEXT_REGION 277 99 278 99 51
STRAND 302 99 309
COLOUR_TEXT_REGION 302 99 309 99 51
STRAND 318 99 319
COLOUR_TEXT_REGION 318 99 319 99 51
HELIX 9 99 11
COLOUR_TEXT_REGION 9 99 11 99 50
HELIX 23 99 37
COLOUR_TEXT_REGION 23 99 37 99 50
HELIX 45 99 49
COLOUR_TEXT_REGION 45 99 49 99 50
HELIX 68 99 88
COLOUR_TEXT_REGION 68 99 88 99 50
HELIX 111 99 112
COLOUR_TEXT_REGION 111 99 112 99 50
HELIX 139 99 147
COLOUR_TEXT_REGION 139 99 147 99 50
HELIX 187 99 194
COLOUR_TEXT_REGION 187 99 194 99 50
HELIX 219 99 226
COLOUR_TEXT_REGION 219 99 226 99 50
HELIX 228 99 229
COLOUR_TEXT_REGION 228 99 229 99 50
HELIX 248 99 256
COLOUR_TEXT_REGION 248 99 256 99 50
HELIX 284 99 287
COLOUR_TEXT_REGION 284 99 287 99 50
HELIX 326 99 342
COLOUR_TEXT_REGION 326 99 342 99 50
HELIX 362 99 375
COLOUR_TEXT_REGION 362 99 375 99 50
HELIX 382 99 386
COLOUR_TEXT_REGION 382 99 386 99 50
STRAND 3 100 10
COLOUR_TEXT_REGION 3 100 10 100 51
STRAND 42 100 48
COLOUR_TEXT_REGION 42 100 48 100 51
STRAND 54 100 60
COLOUR_TEXT_REGION 54 100 60 100 51
STRAND 113 100 119
COLOUR_TEXT_REGION 113 100 119 100 51
STRAND 125 100 131
COLOUR_TEXT_REGION 125 100 131 100 51
STRAND 167 100 174
COLOUR_TEXT_REGION 167 100 174 100 51
STRAND 178 100 182
COLOUR_TEXT_REGION 178 100 182 100 51
STRAND 200 100 203
COLOUR_TEXT_REGION 200 100 203 100 51
STRAND 213 100 219
COLOUR_TEXT_REGION 213 100 219 100 51
STRAND 227 100 229
COLOUR_TEXT_REGION 227 100 229 100 51
STRAND 236 100 241
COLOUR_TEXT_REGION 236 100 241 100 51
STRAND 273 100 277
COLOUR_TEXT_REGION 273 100 277 100 51
STRAND 307 100 308
COLOUR_TEXT_REGION 307 100 308 100 51
STRAND 313 100 317
COLOUR_TEXT_REGION 313 100 317 100 51
STRAND 384 100 384
COLOUR_TEXT_REGION 384 100 384 100 51
HELIX 23 100 37
COLOUR_TEXT_REGION 23 100 37 100 50
HELIX 70 100 88
COLOUR_TEXT_REGION 70 100 88 100 50
HELIX 141 100 148
COLOUR_TEXT_REGION 141 100 148 100 50
HELIX 186 100 194
COLOUR_TEXT_REGION 186 100 194 100 50
HELIX 221 100 226
COLOUR_TEXT_REGION 221 100 226 100 50
HELIX 247 100 254
COLOUR_TEXT_REGION 247 100 254 100 50
HELIX 260 100 267
COLOUR_TEXT_REGION 260 100 267 100 50
HELIX 300 100 306
COLOUR_TEXT_REGION 300 100 306 100 50
HELIX 326 100 342
COLOUR_TEXT_REGION 326 100 342 100 50
HELIX 362 100 377
COLOUR_TEXT_REGION 362 100 377 100 50
HELIX 383 100 383
COLOUR_TEXT_REGION 383 100 383 100 50