SILENT_MODE
BLOCK_FILE jp_FNPhKLW.concise.blc
MAX_NSEQ 596
MAX_INPUT_LEN 598
OUTPUT_FILE jp_FNPhKLW.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 585   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 586 121 595 H SPACE
SUB_CHARS 1 586 121 595 E SPACE
SUB_CHARS 1 586 121 595 - SPACE
STRAND 34 589 37
COLOUR_TEXT_REGION 34 589 37 589 51
STRAND 42 589 47
COLOUR_TEXT_REGION 42 589 47 589 51
STRAND 53 589 57
COLOUR_TEXT_REGION 53 589 57 589 51
STRAND 67 589 69
COLOUR_TEXT_REGION 67 589 69 589 51
STRAND 76 589 78
COLOUR_TEXT_REGION 76 589 78 589 51
STRAND 84 589 86
COLOUR_TEXT_REGION 84 589 86 589 51
HELIX 3 589 26
COLOUR_TEXT_REGION 3 589 26 589 50
HELIX 62 589 66
COLOUR_TEXT_REGION 62 589 66 589 50
HELIX 91 589 104
COLOUR_TEXT_REGION 91 589 104 589 50
STRAND 34 594 37
COLOUR_TEXT_REGION 34 594 37 594 51
STRAND 42 594 47
COLOUR_TEXT_REGION 42 594 47 594 51
STRAND 53 594 57
COLOUR_TEXT_REGION 53 594 57 594 51
STRAND 67 594 69
COLOUR_TEXT_REGION 67 594 69 594 51
STRAND 76 594 78
COLOUR_TEXT_REGION 76 594 78 594 51
STRAND 84 594 86
COLOUR_TEXT_REGION 84 594 86 594 51
STRAND 109 594 110
COLOUR_TEXT_REGION 109 594 110 594 51
HELIX 3 594 26
COLOUR_TEXT_REGION 3 594 26 594 50
HELIX 61 594 66
COLOUR_TEXT_REGION 61 594 66 594 50
HELIX 91 594 104
COLOUR_TEXT_REGION 91 594 104 594 50
STRAND 35 595 37
COLOUR_TEXT_REGION 35 595 37 595 51
STRAND 42 595 47
COLOUR_TEXT_REGION 42 595 47 595 51
STRAND 53 595 56
COLOUR_TEXT_REGION 53 595 56 595 51
STRAND 68 595 70
COLOUR_TEXT_REGION 68 595 70 595 51
STRAND 75 595 79
COLOUR_TEXT_REGION 75 595 79 595 51
STRAND 83 595 86
COLOUR_TEXT_REGION 83 595 86 595 51
HELIX 3 595 25
COLOUR_TEXT_REGION 3 595 25 595 50
HELIX 63 595 67
COLOUR_TEXT_REGION 63 595 67 595 50
HELIX 91 595 105
COLOUR_TEXT_REGION 91 595 105 595 50