SILENT_MODE BLOCK_FILE jp_GjJYxvN.concise.blc MAX_NSEQ 1062 MAX_INPUT_LEN 1064 OUTPUT_FILE jp_GjJYxvN.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 219 1051 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1052 219 1061 H SPACE SUB_CHARS 1 1052 219 1061 E SPACE SUB_CHARS 1 1052 219 1061 - SPACE STRAND 60 1055 65 COLOUR_TEXT_REGION 60 1055 65 1055 51 STRAND 84 1055 89 COLOUR_TEXT_REGION 84 1055 89 1055 51 STRAND 111 1055 115 COLOUR_TEXT_REGION 111 1055 115 1055 51 STRAND 134 1055 138 COLOUR_TEXT_REGION 134 1055 138 1055 51 STRAND 164 1055 168 COLOUR_TEXT_REGION 164 1055 168 1055 51 STRAND 191 1055 191 COLOUR_TEXT_REGION 191 1055 191 1055 51 STRAND 195 1055 200 COLOUR_TEXT_REGION 195 1055 200 1055 51 STRAND 206 1055 211 COLOUR_TEXT_REGION 206 1055 211 1055 51 HELIX 5 1055 14 COLOUR_TEXT_REGION 5 1055 14 1055 50 HELIX 21 1055 34 COLOUR_TEXT_REGION 21 1055 34 1055 50 HELIX 43 1055 55 COLOUR_TEXT_REGION 43 1055 55 1055 50 HELIX 68 1055 77 COLOUR_TEXT_REGION 68 1055 77 1055 50 HELIX 92 1055 104 COLOUR_TEXT_REGION 92 1055 104 1055 50 HELIX 122 1055 125 COLOUR_TEXT_REGION 122 1055 125 1055 50 HELIX 150 1055 156 COLOUR_TEXT_REGION 150 1055 156 1055 50 HELIX 176 1055 184 COLOUR_TEXT_REGION 176 1055 184 1055 50 HELIX 187 1055 190 COLOUR_TEXT_REGION 187 1055 190 1055 50 STRAND 60 1060 65 COLOUR_TEXT_REGION 60 1060 65 1060 51 STRAND 84 1060 89 COLOUR_TEXT_REGION 84 1060 89 1060 51 STRAND 111 1060 115 COLOUR_TEXT_REGION 111 1060 115 1060 51 STRAND 134 1060 139 COLOUR_TEXT_REGION 134 1060 139 1060 51 STRAND 164 1060 168 COLOUR_TEXT_REGION 164 1060 168 1060 51 STRAND 195 1060 200 COLOUR_TEXT_REGION 195 1060 200 1060 51 STRAND 205 1060 211 COLOUR_TEXT_REGION 205 1060 211 1060 51 HELIX 6 1060 14 COLOUR_TEXT_REGION 6 1060 14 1060 50 HELIX 21 1060 34 COLOUR_TEXT_REGION 21 1060 34 1060 50 HELIX 43 1060 55 COLOUR_TEXT_REGION 43 1060 55 1060 50 HELIX 66 1060 77 COLOUR_TEXT_REGION 66 1060 77 1060 50 HELIX 92 1060 104 COLOUR_TEXT_REGION 92 1060 104 1060 50 HELIX 119 1060 126 COLOUR_TEXT_REGION 119 1060 126 1060 50 HELIX 150 1060 156 COLOUR_TEXT_REGION 150 1060 156 1060 50 HELIX 176 1060 191 COLOUR_TEXT_REGION 176 1060 191 1060 50 STRAND 60 1061 64 COLOUR_TEXT_REGION 60 1061 64 1061 51 STRAND 84 1061 89 COLOUR_TEXT_REGION 84 1061 89 1061 51 STRAND 112 1061 115 COLOUR_TEXT_REGION 112 1061 115 1061 51 STRAND 133 1061 137 COLOUR_TEXT_REGION 133 1061 137 1061 51 STRAND 163 1061 168 COLOUR_TEXT_REGION 163 1061 168 1061 51 STRAND 189 1061 191 COLOUR_TEXT_REGION 189 1061 191 1061 51 STRAND 195 1061 201 COLOUR_TEXT_REGION 195 1061 201 1061 51 STRAND 206 1061 212 COLOUR_TEXT_REGION 206 1061 212 1061 51 HELIX 5 1061 14 COLOUR_TEXT_REGION 5 1061 14 1061 50 HELIX 21 1061 33 COLOUR_TEXT_REGION 21 1061 33 1061 50 HELIX 42 1061 55 COLOUR_TEXT_REGION 42 1061 55 1061 50 HELIX 69 1061 77 COLOUR_TEXT_REGION 69 1061 77 1061 50 HELIX 90 1061 105 COLOUR_TEXT_REGION 90 1061 105 1061 50 HELIX 149 1061 156 COLOUR_TEXT_REGION 149 1061 156 1061 50 HELIX 176 1061 183 COLOUR_TEXT_REGION 176 1061 183 1061 50