SILENT_MODE
BLOCK_FILE jp_CApbj_d.concise.blc
MAX_NSEQ 86
MAX_INPUT_LEN 88
OUTPUT_FILE jp_CApbj_d.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 180 75   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 76 180 85 H SPACE
SUB_CHARS 1 76 180 85 E SPACE
SUB_CHARS 1 76 180 85 - SPACE
HELIX 3 79 39
COLOUR_TEXT_REGION 3 79 39 79 50
HELIX 41 79 93
COLOUR_TEXT_REGION 41 79 93 79 50
HELIX 100 79 129
COLOUR_TEXT_REGION 100 79 129 79 50
HELIX 133 79 178
COLOUR_TEXT_REGION 133 79 178 79 50
HELIX 3 84 39
COLOUR_TEXT_REGION 3 84 39 84 50
HELIX 41 84 58
COLOUR_TEXT_REGION 41 84 58 84 50
HELIX 60 84 93
COLOUR_TEXT_REGION 60 84 93 84 50
HELIX 100 84 129
COLOUR_TEXT_REGION 100 84 129 84 50
HELIX 133 84 178
COLOUR_TEXT_REGION 133 84 178 84 50
HELIX 3 85 39
COLOUR_TEXT_REGION 3 85 39 85 50
HELIX 41 85 93
COLOUR_TEXT_REGION 41 85 93 85 50
HELIX 101 85 130
COLOUR_TEXT_REGION 101 85 130 85 50
HELIX 133 85 162
COLOUR_TEXT_REGION 133 85 162 85 50
HELIX 167 85 178
COLOUR_TEXT_REGION 167 85 178 85 50