SILENT_MODE BLOCK_FILE jp_1_Xundm.concise.blc MAX_NSEQ 904 MAX_INPUT_LEN 906 OUTPUT_FILE jp_1_Xundm.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 215 893 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 894 215 903 H SPACE SUB_CHARS 1 894 215 903 E SPACE SUB_CHARS 1 894 215 903 - SPACE STRAND 5 897 9 COLOUR_TEXT_REGION 5 897 9 897 51 STRAND 29 897 32 COLOUR_TEXT_REGION 29 897 32 897 51 STRAND 57 897 59 COLOUR_TEXT_REGION 57 897 59 897 51 STRAND 84 897 87 COLOUR_TEXT_REGION 84 897 87 897 51 STRAND 111 897 113 COLOUR_TEXT_REGION 111 897 113 897 51 STRAND 144 897 147 COLOUR_TEXT_REGION 144 897 147 897 51 STRAND 166 897 169 COLOUR_TEXT_REGION 166 897 169 897 51 STRAND 188 897 191 COLOUR_TEXT_REGION 188 897 191 897 51 HELIX 14 897 24 COLOUR_TEXT_REGION 14 897 24 897 50 HELIX 35 897 40 COLOUR_TEXT_REGION 35 897 40 897 50 HELIX 43 897 52 COLOUR_TEXT_REGION 43 897 52 897 50 HELIX 69 897 79 COLOUR_TEXT_REGION 69 897 79 897 50 HELIX 93 897 105 COLOUR_TEXT_REGION 93 897 105 897 50 HELIX 124 897 139 COLOUR_TEXT_REGION 124 897 139 897 50 HELIX 151 897 161 COLOUR_TEXT_REGION 151 897 161 897 50 HELIX 180 897 184 COLOUR_TEXT_REGION 180 897 184 897 50 HELIX 201 897 213 COLOUR_TEXT_REGION 201 897 213 897 50 STRAND 5 902 9 COLOUR_TEXT_REGION 5 902 9 902 51 STRAND 29 902 32 COLOUR_TEXT_REGION 29 902 32 902 51 STRAND 57 902 60 COLOUR_TEXT_REGION 57 902 60 902 51 STRAND 84 902 87 COLOUR_TEXT_REGION 84 902 87 902 51 STRAND 111 902 113 COLOUR_TEXT_REGION 111 902 113 902 51 STRAND 144 902 147 COLOUR_TEXT_REGION 144 902 147 902 51 STRAND 166 902 169 COLOUR_TEXT_REGION 166 902 169 902 51 STRAND 188 902 191 COLOUR_TEXT_REGION 188 902 191 902 51 HELIX 14 902 24 COLOUR_TEXT_REGION 14 902 24 902 50 HELIX 36 902 39 COLOUR_TEXT_REGION 36 902 39 902 50 HELIX 43 902 52 COLOUR_TEXT_REGION 43 902 52 902 50 HELIX 68 902 79 COLOUR_TEXT_REGION 68 902 79 902 50 HELIX 93 902 105 COLOUR_TEXT_REGION 93 902 105 902 50 HELIX 125 902 138 COLOUR_TEXT_REGION 125 902 138 902 50 HELIX 151 902 160 COLOUR_TEXT_REGION 151 902 160 902 50 HELIX 179 902 184 COLOUR_TEXT_REGION 179 902 184 902 50 HELIX 201 902 213 COLOUR_TEXT_REGION 201 902 213 902 50 STRAND 5 903 9 COLOUR_TEXT_REGION 5 903 9 903 51 STRAND 29 903 32 COLOUR_TEXT_REGION 29 903 32 903 51 STRAND 57 903 59 COLOUR_TEXT_REGION 57 903 59 903 51 STRAND 85 903 87 COLOUR_TEXT_REGION 85 903 87 903 51 STRAND 112 903 114 COLOUR_TEXT_REGION 112 903 114 903 51 STRAND 144 903 147 COLOUR_TEXT_REGION 144 903 147 903 51 STRAND 167 903 170 COLOUR_TEXT_REGION 167 903 170 903 51 STRAND 173 903 173 COLOUR_TEXT_REGION 173 903 173 903 51 STRAND 182 903 184 COLOUR_TEXT_REGION 182 903 184 903 51 STRAND 188 903 191 COLOUR_TEXT_REGION 188 903 191 903 51 HELIX 14 903 24 COLOUR_TEXT_REGION 14 903 24 903 50 HELIX 35 903 41 COLOUR_TEXT_REGION 35 903 41 903 50 HELIX 43 903 52 COLOUR_TEXT_REGION 43 903 52 903 50 HELIX 70 903 79 COLOUR_TEXT_REGION 70 903 79 903 50 HELIX 92 903 104 COLOUR_TEXT_REGION 92 903 104 903 50 HELIX 122 903 139 COLOUR_TEXT_REGION 122 903 139 903 50 HELIX 153 903 161 COLOUR_TEXT_REGION 153 903 161 903 50 HELIX 201 903 213 COLOUR_TEXT_REGION 201 903 213 903 50