SILENT_MODE BLOCK_FILE jp_ubm8gZg.concise.blc MAX_NSEQ 909 MAX_INPUT_LEN 911 OUTPUT_FILE jp_ubm8gZg.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 125 898 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 899 125 908 H SPACE SUB_CHARS 1 899 125 908 E SPACE SUB_CHARS 1 899 125 908 - SPACE STRAND 13 902 23 COLOUR_TEXT_REGION 13 902 23 902 51 STRAND 28 902 35 COLOUR_TEXT_REGION 28 902 35 902 51 STRAND 49 902 54 COLOUR_TEXT_REGION 49 902 54 902 51 STRAND 60 902 67 COLOUR_TEXT_REGION 60 902 67 902 51 STRAND 76 902 82 COLOUR_TEXT_REGION 76 902 82 902 51 STRAND 110 902 114 COLOUR_TEXT_REGION 110 902 114 902 51 STRAND 120 902 122 COLOUR_TEXT_REGION 120 902 122 902 51 HELIX 98 902 102 COLOUR_TEXT_REGION 98 902 102 902 50 STRAND 14 907 23 COLOUR_TEXT_REGION 14 907 23 907 51 STRAND 28 907 35 COLOUR_TEXT_REGION 28 907 35 907 51 STRAND 49 907 54 COLOUR_TEXT_REGION 49 907 54 907 51 STRAND 60 907 67 COLOUR_TEXT_REGION 60 907 67 907 51 STRAND 76 907 83 COLOUR_TEXT_REGION 76 907 83 907 51 STRAND 110 907 114 COLOUR_TEXT_REGION 110 907 114 907 51 STRAND 120 907 122 COLOUR_TEXT_REGION 120 907 122 907 51 HELIX 97 907 102 COLOUR_TEXT_REGION 97 907 102 907 50 STRAND 12 908 23 COLOUR_TEXT_REGION 12 908 23 908 51 STRAND 28 908 35 COLOUR_TEXT_REGION 28 908 35 908 51 STRAND 49 908 54 COLOUR_TEXT_REGION 49 908 54 908 51 STRAND 60 908 65 COLOUR_TEXT_REGION 60 908 65 908 51 STRAND 76 908 81 COLOUR_TEXT_REGION 76 908 81 908 51 STRAND 110 908 114 COLOUR_TEXT_REGION 110 908 114 908 51 STRAND 119 908 122 COLOUR_TEXT_REGION 119 908 122 908 51 HELIX 98 908 103 COLOUR_TEXT_REGION 98 908 103 908 50