SILENT_MODE
BLOCK_FILE jp_jquKZE_.concise.blc
MAX_NSEQ 867
MAX_INPUT_LEN 869
OUTPUT_FILE jp_jquKZE_.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 97 856   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 857 97 866 H SPACE
SUB_CHARS 1 857 97 866 E SPACE
SUB_CHARS 1 857 97 866 - SPACE
STRAND 3 860 9
COLOUR_TEXT_REGION 3 860 9 860 51
STRAND 14 860 19
COLOUR_TEXT_REGION 14 860 19 860 51
STRAND 44 860 54
COLOUR_TEXT_REGION 44 860 54 860 51
STRAND 74 860 82
COLOUR_TEXT_REGION 74 860 82 860 51
STRAND 86 860 90
COLOUR_TEXT_REGION 86 860 90 860 51
HELIX 24 860 31
COLOUR_TEXT_REGION 24 860 31 860 50
STRAND 3 865 9
COLOUR_TEXT_REGION 3 865 9 865 51
STRAND 14 865 19
COLOUR_TEXT_REGION 14 865 19 865 51
STRAND 45 865 54
COLOUR_TEXT_REGION 45 865 54 865 51
STRAND 74 865 82
COLOUR_TEXT_REGION 74 865 82 865 51
STRAND 86 865 90
COLOUR_TEXT_REGION 86 865 90 865 51
HELIX 25 865 31
COLOUR_TEXT_REGION 25 865 31 865 50
STRAND 2 866 8
COLOUR_TEXT_REGION 2 866 8 866 51
STRAND 14 866 19
COLOUR_TEXT_REGION 14 866 19 866 51
STRAND 44 866 53
COLOUR_TEXT_REGION 44 866 53 866 51
STRAND 74 866 82
COLOUR_TEXT_REGION 74 866 82 866 51
STRAND 86 866 91
COLOUR_TEXT_REGION 86 866 91 866 51
HELIX 24 866 31
COLOUR_TEXT_REGION 24 866 31 866 50