SILENT_MODE
BLOCK_FILE jp_Qip6pI7.concise.blc
MAX_NSEQ 371
MAX_INPUT_LEN 373
OUTPUT_FILE jp_Qip6pI7.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 116 360   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 361 116 370 H SPACE
SUB_CHARS 1 361 116 370 E SPACE
SUB_CHARS 1 361 116 370 - SPACE
STRAND 34 364 35
COLOUR_TEXT_REGION 34 364 35 364 51
HELIX 13 364 31
COLOUR_TEXT_REGION 13 364 31 364 50
HELIX 43 364 74
COLOUR_TEXT_REGION 43 364 74 364 50
HELIX 79 364 108
COLOUR_TEXT_REGION 79 364 108 364 50
STRAND 34 369 35
COLOUR_TEXT_REGION 34 369 35 369 51
HELIX 13 369 31
COLOUR_TEXT_REGION 13 369 31 369 50
HELIX 44 369 72
COLOUR_TEXT_REGION 44 369 72 369 50
HELIX 80 369 109
COLOUR_TEXT_REGION 80 369 109 369 50
HELIX 13 370 34
COLOUR_TEXT_REGION 13 370 34 370 50
HELIX 43 370 74
COLOUR_TEXT_REGION 43 370 74 370 50
HELIX 79 370 108
COLOUR_TEXT_REGION 79 370 108 370 50