SILENT_MODE BLOCK_FILE jp_qRGIaqZ.concise.blc MAX_NSEQ 523 MAX_INPUT_LEN 525 OUTPUT_FILE jp_qRGIaqZ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 142 512 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 513 142 522 H SPACE SUB_CHARS 1 513 142 522 E SPACE SUB_CHARS 1 513 142 522 - SPACE HELIX 3 516 11 COLOUR_TEXT_REGION 3 516 11 516 50 HELIX 20 516 31 COLOUR_TEXT_REGION 20 516 31 516 50 HELIX 37 516 48 COLOUR_TEXT_REGION 37 516 48 516 50 HELIX 53 516 68 COLOUR_TEXT_REGION 53 516 68 516 50 HELIX 72 516 78 COLOUR_TEXT_REGION 72 516 78 516 50 HELIX 81 516 91 COLOUR_TEXT_REGION 81 516 91 516 50 HELIX 97 516 114 COLOUR_TEXT_REGION 97 516 114 516 50 HELIX 121 516 132 COLOUR_TEXT_REGION 121 516 132 516 50 HELIX 3 521 11 COLOUR_TEXT_REGION 3 521 11 521 50 HELIX 20 521 31 COLOUR_TEXT_REGION 20 521 31 521 50 HELIX 37 521 48 COLOUR_TEXT_REGION 37 521 48 521 50 HELIX 53 521 68 COLOUR_TEXT_REGION 53 521 68 521 50 HELIX 72 521 78 COLOUR_TEXT_REGION 72 521 78 521 50 HELIX 81 521 90 COLOUR_TEXT_REGION 81 521 90 521 50 HELIX 97 521 114 COLOUR_TEXT_REGION 97 521 114 521 50 HELIX 121 521 132 COLOUR_TEXT_REGION 121 521 132 521 50 HELIX 3 522 11 COLOUR_TEXT_REGION 3 522 11 522 50 HELIX 20 522 31 COLOUR_TEXT_REGION 20 522 31 522 50 HELIX 36 522 48 COLOUR_TEXT_REGION 36 522 48 522 50 HELIX 53 522 68 COLOUR_TEXT_REGION 53 522 68 522 50 HELIX 73 522 77 COLOUR_TEXT_REGION 73 522 77 522 50 HELIX 81 522 91 COLOUR_TEXT_REGION 81 522 91 522 50 HELIX 97 522 114 COLOUR_TEXT_REGION 97 522 114 522 50 HELIX 121 522 132 COLOUR_TEXT_REGION 121 522 132 522 50