SILENT_MODE BLOCK_FILE jp_EAvlOYr.concise.blc MAX_NSEQ 714 MAX_INPUT_LEN 716 OUTPUT_FILE jp_EAvlOYr.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 166 703 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 704 166 713 H SPACE SUB_CHARS 1 704 166 713 E SPACE SUB_CHARS 1 704 166 713 - SPACE STRAND 76 707 84 COLOUR_TEXT_REGION 76 707 84 707 51 STRAND 90 707 96 COLOUR_TEXT_REGION 90 707 96 707 51 STRAND 127 707 134 COLOUR_TEXT_REGION 127 707 134 707 51 STRAND 141 707 150 COLOUR_TEXT_REGION 141 707 150 707 51 STRAND 158 707 165 COLOUR_TEXT_REGION 158 707 165 707 51 HELIX 8 707 16 COLOUR_TEXT_REGION 8 707 16 707 50 STRAND 76 712 84 COLOUR_TEXT_REGION 76 712 84 712 51 STRAND 90 712 96 COLOUR_TEXT_REGION 90 712 96 712 51 STRAND 128 712 133 COLOUR_TEXT_REGION 128 712 133 712 51 STRAND 142 712 150 COLOUR_TEXT_REGION 142 712 150 712 51 STRAND 158 712 165 COLOUR_TEXT_REGION 158 712 165 712 51 HELIX 8 712 15 COLOUR_TEXT_REGION 8 712 15 712 50 STRAND 76 713 83 COLOUR_TEXT_REGION 76 713 83 713 51 STRAND 91 713 95 COLOUR_TEXT_REGION 91 713 95 713 51 STRAND 127 713 134 COLOUR_TEXT_REGION 127 713 134 713 51 STRAND 141 713 149 COLOUR_TEXT_REGION 141 713 149 713 51 STRAND 157 713 165 COLOUR_TEXT_REGION 157 713 165 713 51 HELIX 8 713 16 COLOUR_TEXT_REGION 8 713 16 713 50 HELIX 30 713 33 COLOUR_TEXT_REGION 30 713 33 713 50