SILENT_MODE BLOCK_FILE jp_Fj_dCPv.concise.blc MAX_NSEQ 269 MAX_INPUT_LEN 271 OUTPUT_FILE jp_Fj_dCPv.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 165 258 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 259 165 268 H SPACE SUB_CHARS 1 259 165 268 E SPACE SUB_CHARS 1 259 165 268 - SPACE STRAND 3 262 7 COLOUR_TEXT_REGION 3 262 7 262 51 STRAND 44 262 46 COLOUR_TEXT_REGION 44 262 46 262 51 STRAND 58 262 60 COLOUR_TEXT_REGION 58 262 60 262 51 STRAND 66 262 69 COLOUR_TEXT_REGION 66 262 69 262 51 STRAND 76 262 80 COLOUR_TEXT_REGION 76 262 80 262 51 STRAND 96 262 100 COLOUR_TEXT_REGION 96 262 100 262 51 STRAND 112 262 114 COLOUR_TEXT_REGION 112 262 114 262 51 STRAND 121 262 123 COLOUR_TEXT_REGION 121 262 123 262 51 STRAND 140 262 141 COLOUR_TEXT_REGION 140 262 141 262 51 STRAND 160 262 164 COLOUR_TEXT_REGION 160 262 164 262 51 HELIX 13 262 19 COLOUR_TEXT_REGION 13 262 19 262 50 HELIX 24 262 30 COLOUR_TEXT_REGION 24 262 30 262 50 HELIX 145 262 153 COLOUR_TEXT_REGION 145 262 153 262 50 STRAND 3 267 8 COLOUR_TEXT_REGION 3 267 8 267 51 STRAND 43 267 47 COLOUR_TEXT_REGION 43 267 47 267 51 STRAND 58 267 63 COLOUR_TEXT_REGION 58 267 63 267 51 STRAND 66 267 69 COLOUR_TEXT_REGION 66 267 69 267 51 STRAND 76 267 83 COLOUR_TEXT_REGION 76 267 83 267 51 STRAND 96 267 100 COLOUR_TEXT_REGION 96 267 100 267 51 STRAND 112 267 114 COLOUR_TEXT_REGION 112 267 114 267 51 STRAND 121 267 124 COLOUR_TEXT_REGION 121 267 124 267 51 STRAND 140 267 141 COLOUR_TEXT_REGION 140 267 141 267 51 STRAND 160 267 164 COLOUR_TEXT_REGION 160 267 164 267 51 HELIX 13 267 19 COLOUR_TEXT_REGION 13 267 19 267 50 HELIX 24 267 30 COLOUR_TEXT_REGION 24 267 30 267 50 HELIX 146 267 153 COLOUR_TEXT_REGION 146 267 153 267 50 STRAND 3 268 7 COLOUR_TEXT_REGION 3 268 7 268 51 STRAND 96 268 99 COLOUR_TEXT_REGION 96 268 99 268 51 STRAND 112 268 114 COLOUR_TEXT_REGION 112 268 114 268 51 STRAND 141 268 142 COLOUR_TEXT_REGION 141 268 142 268 51 STRAND 160 268 164 COLOUR_TEXT_REGION 160 268 164 268 51 HELIX 13 268 19 COLOUR_TEXT_REGION 13 268 19 268 50 HELIX 24 268 30 COLOUR_TEXT_REGION 24 268 30 268 50 HELIX 145 268 153 COLOUR_TEXT_REGION 145 268 153 268 50