SILENT_MODE BLOCK_FILE jp_eg1m4OC.concise.blc MAX_NSEQ 915 MAX_INPUT_LEN 917 OUTPUT_FILE jp_eg1m4OC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 323 904 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 905 323 914 H SPACE SUB_CHARS 1 905 323 914 E SPACE SUB_CHARS 1 905 323 914 - SPACE HELIX 0 908 45 COLOUR_TEXT_REGION 0 908 45 908 50 HELIX 55 908 105 COLOUR_TEXT_REGION 55 908 105 908 50 HELIX 122 908 208 COLOUR_TEXT_REGION 122 908 208 908 50 HELIX 210 908 270 COLOUR_TEXT_REGION 210 908 270 908 50 HELIX 277 908 318 COLOUR_TEXT_REGION 277 908 318 908 50 HELIX 0 913 43 COLOUR_TEXT_REGION 0 913 43 913 50 HELIX 55 913 105 COLOUR_TEXT_REGION 55 913 105 913 50 HELIX 120 913 159 COLOUR_TEXT_REGION 120 913 159 913 50 HELIX 161 913 207 COLOUR_TEXT_REGION 161 913 207 913 50 HELIX 210 913 214 COLOUR_TEXT_REGION 210 913 214 913 50 HELIX 220 913 271 COLOUR_TEXT_REGION 220 913 271 913 50 HELIX 277 913 318 COLOUR_TEXT_REGION 277 913 318 913 50 STRAND 123 914 124 COLOUR_TEXT_REGION 123 914 124 914 51 HELIX 2 914 9 COLOUR_TEXT_REGION 2 914 9 914 50 HELIX 12 914 45 COLOUR_TEXT_REGION 12 914 45 914 50 HELIX 54 914 105 COLOUR_TEXT_REGION 54 914 105 914 50 HELIX 129 914 137 COLOUR_TEXT_REGION 129 914 137 914 50 HELIX 141 914 194 COLOUR_TEXT_REGION 141 914 194 914 50 HELIX 200 914 244 COLOUR_TEXT_REGION 200 914 244 914 50 HELIX 250 914 264 COLOUR_TEXT_REGION 250 914 264 914 50 HELIX 277 914 318 COLOUR_TEXT_REGION 277 914 318 914 50