SILENT_MODE BLOCK_FILE jp_zUy4Lsc.concise.blc MAX_NSEQ 347 MAX_INPUT_LEN 349 OUTPUT_FILE jp_zUy4Lsc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 100 336 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 337 100 346 H SPACE SUB_CHARS 1 337 100 346 E SPACE SUB_CHARS 1 337 100 346 - SPACE STRAND 79 340 83 COLOUR_TEXT_REGION 79 340 83 340 51 STRAND 91 340 96 COLOUR_TEXT_REGION 91 340 96 340 51 HELIX 6 340 26 COLOUR_TEXT_REGION 6 340 26 340 50 HELIX 32 340 48 COLOUR_TEXT_REGION 32 340 48 340 50 HELIX 53 340 63 COLOUR_TEXT_REGION 53 340 63 340 50 HELIX 73 340 77 COLOUR_TEXT_REGION 73 340 77 340 50 STRAND 79 345 83 COLOUR_TEXT_REGION 79 345 83 345 51 STRAND 91 345 96 COLOUR_TEXT_REGION 91 345 96 345 51 HELIX 6 345 26 COLOUR_TEXT_REGION 6 345 26 345 50 HELIX 32 345 48 COLOUR_TEXT_REGION 32 345 48 345 50 HELIX 53 345 62 COLOUR_TEXT_REGION 53 345 62 345 50 HELIX 73 345 74 COLOUR_TEXT_REGION 73 345 74 345 50 HELIX 76 345 77 COLOUR_TEXT_REGION 76 345 77 345 50 STRAND 80 346 83 COLOUR_TEXT_REGION 80 346 83 346 51 STRAND 91 346 96 COLOUR_TEXT_REGION 91 346 96 346 51 HELIX 5 346 26 COLOUR_TEXT_REGION 5 346 26 346 50 HELIX 33 346 48 COLOUR_TEXT_REGION 33 346 48 346 50 HELIX 53 346 64 COLOUR_TEXT_REGION 53 346 64 346 50 HELIX 73 346 77 COLOUR_TEXT_REGION 73 346 77 346 50