SILENT_MODE
BLOCK_FILE jp_FBSxfzg.concise.blc
MAX_NSEQ 804
MAX_INPUT_LEN 806
OUTPUT_FILE jp_FBSxfzg.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 122 793   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 794 122 803 H SPACE
SUB_CHARS 1 794 122 803 E SPACE
SUB_CHARS 1 794 122 803 - SPACE
STRAND 6 797 10
COLOUR_TEXT_REGION 6 797 10 797 51
STRAND 15 797 17
COLOUR_TEXT_REGION 15 797 17 797 51
STRAND 23 797 30
COLOUR_TEXT_REGION 23 797 30 797 51
STRAND 36 797 39
COLOUR_TEXT_REGION 36 797 39 797 51
STRAND 78 797 86
COLOUR_TEXT_REGION 78 797 86 797 51
STRAND 90 797 94
COLOUR_TEXT_REGION 90 797 94 797 51
HELIX 55 797 58
COLOUR_TEXT_REGION 55 797 58 797 50
HELIX 105 797 116
COLOUR_TEXT_REGION 105 797 116 797 50
STRAND 6 802 10
COLOUR_TEXT_REGION 6 802 10 802 51
STRAND 15 802 17
COLOUR_TEXT_REGION 15 802 17 802 51
STRAND 23 802 30
COLOUR_TEXT_REGION 23 802 30 802 51
STRAND 36 802 38
COLOUR_TEXT_REGION 36 802 38 802 51
STRAND 45 802 46
COLOUR_TEXT_REGION 45 802 46 802 51
STRAND 78 802 86
COLOUR_TEXT_REGION 78 802 86 802 51
STRAND 90 802 94
COLOUR_TEXT_REGION 90 802 94 802 51
HELIX 56 802 56
COLOUR_TEXT_REGION 56 802 56 802 50
HELIX 105 802 116
COLOUR_TEXT_REGION 105 802 116 802 50
STRAND 7 803 10
COLOUR_TEXT_REGION 7 803 10 803 51
STRAND 15 803 18
COLOUR_TEXT_REGION 15 803 18 803 51
STRAND 23 803 30
COLOUR_TEXT_REGION 23 803 30 803 51
STRAND 36 803 39
COLOUR_TEXT_REGION 36 803 39 803 51
STRAND 79 803 86
COLOUR_TEXT_REGION 79 803 86 803 51
STRAND 90 803 94
COLOUR_TEXT_REGION 90 803 94 803 51
HELIX 49 803 59
COLOUR_TEXT_REGION 49 803 59 803 50
HELIX 106 803 117
COLOUR_TEXT_REGION 106 803 117 803 50