SILENT_MODE BLOCK_FILE jp_d6nCJvd.concise.blc MAX_NSEQ 845 MAX_INPUT_LEN 847 OUTPUT_FILE jp_d6nCJvd.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 101 834 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 835 101 844 H SPACE SUB_CHARS 1 835 101 844 E SPACE SUB_CHARS 1 835 101 844 - SPACE STRAND 17 838 23 COLOUR_TEXT_REGION 17 838 23 838 51 STRAND 29 838 35 COLOUR_TEXT_REGION 29 838 35 838 51 STRAND 65 838 70 COLOUR_TEXT_REGION 65 838 70 838 51 STRAND 75 838 77 COLOUR_TEXT_REGION 75 838 77 838 51 STRAND 85 838 93 COLOUR_TEXT_REGION 85 838 93 838 51 HELIX 3 838 12 COLOUR_TEXT_REGION 3 838 12 838 50 HELIX 36 838 43 COLOUR_TEXT_REGION 36 838 43 838 50 STRAND 17 843 23 COLOUR_TEXT_REGION 17 843 23 843 51 STRAND 29 843 35 COLOUR_TEXT_REGION 29 843 35 843 51 STRAND 66 843 69 COLOUR_TEXT_REGION 66 843 69 843 51 STRAND 75 843 77 COLOUR_TEXT_REGION 75 843 77 843 51 STRAND 85 843 90 COLOUR_TEXT_REGION 85 843 90 843 51 HELIX 3 843 12 COLOUR_TEXT_REGION 3 843 12 843 50 HELIX 36 843 44 COLOUR_TEXT_REGION 36 843 44 843 50 STRAND 16 844 23 COLOUR_TEXT_REGION 16 844 23 844 51 STRAND 28 844 34 COLOUR_TEXT_REGION 28 844 34 844 51 STRAND 65 844 70 COLOUR_TEXT_REGION 65 844 70 844 51 STRAND 75 844 77 COLOUR_TEXT_REGION 75 844 77 844 51 STRAND 85 844 94 COLOUR_TEXT_REGION 85 844 94 844 51 HELIX 3 844 12 COLOUR_TEXT_REGION 3 844 12 844 50