Filename Description -------- ----------- jp_S6PUdZ_.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_S6PUdZ_.als Alscript command file. Used to generate PS/PDF outputjp_S6PUdZ_.blast.gz PSIBLAST output (compressed) jp_S6PUdZ_.coils.csv The output from coils in CSV format jp_S6PUdZ_.coilseq.lupas_14 The output from coils using a window length of 14 jp_S6PUdZ_.coilseq.lupas_21 The output from coils using a window length of 21 jp_S6PUdZ_.coilseq.lupas_28 The output from coils using a window length of 28 jp_S6PUdZ_.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_S6PUdZ_.concise.blc A BLC file of the prediction and alignment jp_S6PUdZ_.concise.pdf A PDF file of the prediction and alignment jp_S6PUdZ_.fasta Input query sequence in FASTA format jp_S6PUdZ_.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_S6PUdZ_.hmm The HHMer2 profile of the alignment jp_S6PUdZ_.html A HTML file of the prediction and alignment jp_S6PUdZ_.input Your raw input jp_S6PUdZ_.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_S6PUdZ_.jnet The output from Jnet jp_S6PUdZ_.profile PSIBLAST profile jp_S6PUdZ_.pssm PSIBLAST PSSM in a format for Jnet jp_S6PUdZ_.seq Your sequence jp_S6PUdZ_.simple.html The brief HTML output of the query sequence and prediction only jp_S6PUdZ_.svg.html A Jalview generated SVG file with summary of the results.