SILENT_MODE
BLOCK_FILE jp_S6PUdZ_.concise.blc
MAX_NSEQ 197
MAX_INPUT_LEN 199
OUTPUT_FILE jp_S6PUdZ_.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 138 186   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 187 138 196 H SPACE
SUB_CHARS 1 187 138 196 E SPACE
SUB_CHARS 1 187 138 196 - SPACE
STRAND 27 190 33
COLOUR_TEXT_REGION 27 190 33 190 51
STRAND 88 190 95
COLOUR_TEXT_REGION 88 190 95 190 51
STRAND 103 190 110
COLOUR_TEXT_REGION 103 190 110 190 51
STRAND 120 190 122
COLOUR_TEXT_REGION 120 190 122 190 51
HELIX 6 190 20
COLOUR_TEXT_REGION 6 190 20 190 50
HELIX 39 190 53
COLOUR_TEXT_REGION 39 190 53 190 50
HELIX 62 190 78
COLOUR_TEXT_REGION 62 190 78 190 50
HELIX 129 190 136
COLOUR_TEXT_REGION 129 190 136 190 50
STRAND 27 195 33
COLOUR_TEXT_REGION 27 195 33 195 51
STRAND 88 195 95
COLOUR_TEXT_REGION 88 195 95 195 51
STRAND 104 195 110
COLOUR_TEXT_REGION 104 195 110 195 51
STRAND 120 195 122
COLOUR_TEXT_REGION 120 195 122 195 51
HELIX 6 195 20
COLOUR_TEXT_REGION 6 195 20 195 50
HELIX 39 195 53
COLOUR_TEXT_REGION 39 195 53 195 50
HELIX 61 195 78
COLOUR_TEXT_REGION 61 195 78 195 50
HELIX 129 195 136
COLOUR_TEXT_REGION 129 195 136 195 50
STRAND 27 196 33
COLOUR_TEXT_REGION 27 196 33 196 51
STRAND 87 196 96
COLOUR_TEXT_REGION 87 196 96 196 51
STRAND 103 196 110
COLOUR_TEXT_REGION 103 196 110 196 51
STRAND 119 196 123
COLOUR_TEXT_REGION 119 196 123 196 51
HELIX 6 196 20
COLOUR_TEXT_REGION 6 196 20 196 50
HELIX 39 196 53
COLOUR_TEXT_REGION 39 196 53 196 50
HELIX 66 196 77
COLOUR_TEXT_REGION 66 196 77 196 50
HELIX 129 196 136
COLOUR_TEXT_REGION 129 196 136 196 50