SILENT_MODE
BLOCK_FILE jp_s9Z0MbX.concise.blc
MAX_NSEQ 693
MAX_INPUT_LEN 695
OUTPUT_FILE jp_s9Z0MbX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 110 682   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 683 110 692 H SPACE
SUB_CHARS 1 683 110 692 E SPACE
SUB_CHARS 1 683 110 692 - SPACE
STRAND 3 686 8
COLOUR_TEXT_REGION 3 686 8 686 51
STRAND 29 686 38
COLOUR_TEXT_REGION 29 686 38 686 51
STRAND 44 686 46
COLOUR_TEXT_REGION 44 686 46 686 51
STRAND 52 686 59
COLOUR_TEXT_REGION 52 686 59 686 51
STRAND 84 686 89
COLOUR_TEXT_REGION 84 686 89 686 51
STRAND 93 686 97
COLOUR_TEXT_REGION 93 686 97 686 51
HELIX 13 686 22
COLOUR_TEXT_REGION 13 686 22 686 50
HELIX 64 686 75
COLOUR_TEXT_REGION 64 686 75 686 50
STRAND 3 691 8
COLOUR_TEXT_REGION 3 691 8 691 51
STRAND 29 691 39
COLOUR_TEXT_REGION 29 691 39 691 51
STRAND 43 691 46
COLOUR_TEXT_REGION 43 691 46 691 51
STRAND 51 691 59
COLOUR_TEXT_REGION 51 691 59 691 51
STRAND 84 691 89
COLOUR_TEXT_REGION 84 691 89 691 51
STRAND 93 691 97
COLOUR_TEXT_REGION 93 691 97 691 51
HELIX 13 691 22
COLOUR_TEXT_REGION 13 691 22 691 50
HELIX 64 691 75
COLOUR_TEXT_REGION 64 691 75 691 50
HELIX 103 691 104
COLOUR_TEXT_REGION 103 691 104 691 50
STRAND 3 692 8
COLOUR_TEXT_REGION 3 692 8 692 51
STRAND 28 692 36
COLOUR_TEXT_REGION 28 692 36 692 51
STRAND 45 692 46
COLOUR_TEXT_REGION 45 692 46 692 51
STRAND 52 692 59
COLOUR_TEXT_REGION 52 692 59 692 51
STRAND 83 692 89
COLOUR_TEXT_REGION 83 692 89 692 51
STRAND 93 692 96
COLOUR_TEXT_REGION 93 692 96 692 51
HELIX 13 692 22
COLOUR_TEXT_REGION 13 692 22 692 50
HELIX 64 692 75
COLOUR_TEXT_REGION 64 692 75 692 50