SILENT_MODE BLOCK_FILE jp_VFYaS6g.concise.blc MAX_NSEQ 933 MAX_INPUT_LEN 935 OUTPUT_FILE jp_VFYaS6g.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 151 922 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 923 151 932 H SPACE SUB_CHARS 1 923 151 932 E SPACE SUB_CHARS 1 923 151 932 - SPACE STRAND 101 926 105 COLOUR_TEXT_REGION 101 926 105 926 51 STRAND 110 926 119 COLOUR_TEXT_REGION 110 926 119 926 51 STRAND 124 926 129 COLOUR_TEXT_REGION 124 926 129 926 51 HELIX 4 926 20 COLOUR_TEXT_REGION 4 926 20 926 50 HELIX 29 926 45 COLOUR_TEXT_REGION 29 926 45 926 50 HELIX 75 926 80 COLOUR_TEXT_REGION 75 926 80 926 50 STRAND 61 931 62 COLOUR_TEXT_REGION 61 931 62 931 51 STRAND 101 931 106 COLOUR_TEXT_REGION 101 931 106 931 51 STRAND 110 931 119 COLOUR_TEXT_REGION 110 931 119 931 51 STRAND 124 931 129 COLOUR_TEXT_REGION 124 931 129 931 51 HELIX 4 931 20 COLOUR_TEXT_REGION 4 931 20 931 50 HELIX 30 931 45 COLOUR_TEXT_REGION 30 931 45 931 50 HELIX 75 931 80 COLOUR_TEXT_REGION 75 931 80 931 50 STRAND 76 932 78 COLOUR_TEXT_REGION 76 932 78 932 51 STRAND 110 932 119 COLOUR_TEXT_REGION 110 932 119 932 51 STRAND 124 932 130 COLOUR_TEXT_REGION 124 932 130 932 51 HELIX 4 932 20 COLOUR_TEXT_REGION 4 932 20 932 50 HELIX 28 932 45 COLOUR_TEXT_REGION 28 932 45 932 50 HELIX 81 932 86 COLOUR_TEXT_REGION 81 932 86 932 50 HELIX 97 932 102 COLOUR_TEXT_REGION 97 932 102 932 50