SILENT_MODE BLOCK_FILE jp_2OuEcF4.concise.blc MAX_NSEQ 709 MAX_INPUT_LEN 711 OUTPUT_FILE jp_2OuEcF4.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 221 698 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 699 221 708 H SPACE SUB_CHARS 1 699 221 708 E SPACE SUB_CHARS 1 699 221 708 - SPACE HELIX 4 702 10 COLOUR_TEXT_REGION 4 702 10 702 50 HELIX 18 702 66 COLOUR_TEXT_REGION 18 702 66 702 50 HELIX 75 702 111 COLOUR_TEXT_REGION 75 702 111 702 50 HELIX 113 702 138 COLOUR_TEXT_REGION 113 702 138 702 50 HELIX 146 702 217 COLOUR_TEXT_REGION 146 702 217 702 50 HELIX 4 707 9 COLOUR_TEXT_REGION 4 707 9 707 50 HELIX 17 707 66 COLOUR_TEXT_REGION 17 707 66 707 50 HELIX 76 707 111 COLOUR_TEXT_REGION 76 707 111 707 50 HELIX 113 707 138 COLOUR_TEXT_REGION 113 707 138 707 50 HELIX 145 707 178 COLOUR_TEXT_REGION 145 707 178 707 50 HELIX 180 707 218 COLOUR_TEXT_REGION 180 707 218 707 50 HELIX 3 708 10 COLOUR_TEXT_REGION 3 708 10 708 50 HELIX 18 708 67 COLOUR_TEXT_REGION 18 708 67 708 50 HELIX 75 708 109 COLOUR_TEXT_REGION 75 708 109 708 50 HELIX 113 708 138 COLOUR_TEXT_REGION 113 708 138 708 50 HELIX 149 708 217 COLOUR_TEXT_REGION 149 708 217 708 50