SILENT_MODE BLOCK_FILE jp_NHE_D4p.concise.blc MAX_NSEQ 685 MAX_INPUT_LEN 687 OUTPUT_FILE jp_NHE_D4p.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 126 674 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 675 126 684 H SPACE SUB_CHARS 1 675 126 684 E SPACE SUB_CHARS 1 675 126 684 - SPACE STRAND 7 678 7 COLOUR_TEXT_REGION 7 678 7 678 51 STRAND 14 678 18 COLOUR_TEXT_REGION 14 678 18 678 51 STRAND 38 678 45 COLOUR_TEXT_REGION 38 678 45 678 51 STRAND 53 678 60 COLOUR_TEXT_REGION 53 678 60 678 51 STRAND 66 678 69 COLOUR_TEXT_REGION 66 678 69 678 51 STRAND 73 678 86 COLOUR_TEXT_REGION 73 678 86 678 51 STRAND 90 678 94 COLOUR_TEXT_REGION 90 678 94 678 51 STRAND 98 678 101 COLOUR_TEXT_REGION 98 678 101 678 51 STRAND 106 678 111 COLOUR_TEXT_REGION 106 678 111 678 51 STRAND 115 678 122 COLOUR_TEXT_REGION 115 678 122 678 51 STRAND 7 683 8 COLOUR_TEXT_REGION 7 683 8 683 51 STRAND 15 683 18 COLOUR_TEXT_REGION 15 683 18 683 51 STRAND 38 683 44 COLOUR_TEXT_REGION 38 683 44 683 51 STRAND 53 683 60 COLOUR_TEXT_REGION 53 683 60 683 51 STRAND 67 683 69 COLOUR_TEXT_REGION 67 683 69 683 51 STRAND 73 683 86 COLOUR_TEXT_REGION 73 683 86 683 51 STRAND 90 683 94 COLOUR_TEXT_REGION 90 683 94 683 51 STRAND 98 683 101 COLOUR_TEXT_REGION 98 683 101 683 51 STRAND 106 683 111 COLOUR_TEXT_REGION 106 683 111 683 51 STRAND 115 683 122 COLOUR_TEXT_REGION 115 683 122 683 51 STRAND 7 684 7 COLOUR_TEXT_REGION 7 684 7 684 51 STRAND 14 684 18 COLOUR_TEXT_REGION 14 684 18 684 51 STRAND 22 684 22 COLOUR_TEXT_REGION 22 684 22 684 51 STRAND 38 684 45 COLOUR_TEXT_REGION 38 684 45 684 51 STRAND 53 684 60 COLOUR_TEXT_REGION 53 684 60 684 51 STRAND 66 684 69 COLOUR_TEXT_REGION 66 684 69 684 51 STRAND 73 684 86 COLOUR_TEXT_REGION 73 684 86 684 51 STRAND 89 684 94 COLOUR_TEXT_REGION 89 684 94 684 51 STRAND 98 684 101 COLOUR_TEXT_REGION 98 684 101 684 51 STRAND 106 684 111 COLOUR_TEXT_REGION 106 684 111 684 51 STRAND 115 684 122 COLOUR_TEXT_REGION 115 684 122 684 51