SILENT_MODE
BLOCK_FILE jp_LyfZsRQ.concise.blc
MAX_NSEQ 824
MAX_INPUT_LEN 826
OUTPUT_FILE jp_LyfZsRQ.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 113 813   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 814 113 823 H SPACE
SUB_CHARS 1 814 113 823 E SPACE
SUB_CHARS 1 814 113 823 - SPACE
STRAND 22 817 27
COLOUR_TEXT_REGION 22 817 27 817 51
STRAND 34 817 41
COLOUR_TEXT_REGION 34 817 41 817 51
STRAND 48 817 54
COLOUR_TEXT_REGION 48 817 54 817 51
STRAND 61 817 70
COLOUR_TEXT_REGION 61 817 70 817 51
STRAND 78 817 85
COLOUR_TEXT_REGION 78 817 85 817 51
STRAND 93 817 98
COLOUR_TEXT_REGION 93 817 98 817 51
STRAND 106 817 110
COLOUR_TEXT_REGION 106 817 110 817 51
STRAND 22 822 27
COLOUR_TEXT_REGION 22 822 27 822 51
STRAND 34 822 41
COLOUR_TEXT_REGION 34 822 41 822 51
STRAND 48 822 54
COLOUR_TEXT_REGION 48 822 54 822 51
STRAND 61 822 70
COLOUR_TEXT_REGION 61 822 70 822 51
STRAND 78 822 85
COLOUR_TEXT_REGION 78 822 85 822 51
STRAND 93 822 98
COLOUR_TEXT_REGION 93 822 98 822 51
STRAND 106 822 110
COLOUR_TEXT_REGION 106 822 110 822 51
STRAND 23 823 27
COLOUR_TEXT_REGION 23 823 27 823 51
STRAND 34 823 41
COLOUR_TEXT_REGION 34 823 41 823 51
STRAND 49 823 54
COLOUR_TEXT_REGION 49 823 54 823 51
STRAND 61 823 71
COLOUR_TEXT_REGION 61 823 71 823 51
STRAND 78 823 86
COLOUR_TEXT_REGION 78 823 86 823 51
STRAND 93 823 98
COLOUR_TEXT_REGION 93 823 98 823 51
STRAND 106 823 110
COLOUR_TEXT_REGION 106 823 110 823 51