SILENT_MODE
BLOCK_FILE jp_vmETF_o.concise.blc
MAX_NSEQ 184
MAX_INPUT_LEN 186
OUTPUT_FILE jp_vmETF_o.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 96 173   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 174 96 183 H SPACE
SUB_CHARS 1 174 96 183 E SPACE
SUB_CHARS 1 174 96 183 - SPACE
STRAND 5 177 5
COLOUR_TEXT_REGION 5 177 5 177 51
HELIX 7 177 23
COLOUR_TEXT_REGION 7 177 23 177 50
HELIX 28 177 42
COLOUR_TEXT_REGION 28 177 42 177 50
HELIX 49 177 74
COLOUR_TEXT_REGION 49 177 74 177 50
HELIX 79 177 94
COLOUR_TEXT_REGION 79 177 94 177 50
STRAND 3 182 6
COLOUR_TEXT_REGION 3 182 6 182 51
HELIX 8 182 22
COLOUR_TEXT_REGION 8 182 22 182 50
HELIX 28 182 42
COLOUR_TEXT_REGION 28 182 42 182 50
HELIX 50 182 74
COLOUR_TEXT_REGION 50 182 74 182 50
HELIX 79 182 94
COLOUR_TEXT_REGION 79 182 94 182 50
HELIX 6 183 23
COLOUR_TEXT_REGION 6 183 23 183 50
HELIX 28 183 42
COLOUR_TEXT_REGION 28 183 42 183 50
HELIX 49 183 74
COLOUR_TEXT_REGION 49 183 74 183 50
HELIX 79 183 94
COLOUR_TEXT_REGION 79 183 94 183 50