SILENT_MODE BLOCK_FILE jp_MsINA2Q.concise.blc MAX_NSEQ 869 MAX_INPUT_LEN 871 OUTPUT_FILE jp_MsINA2Q.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 164 858 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 859 164 868 H SPACE SUB_CHARS 1 859 164 868 E SPACE SUB_CHARS 1 859 164 868 - SPACE HELIX 13 862 20 COLOUR_TEXT_REGION 13 862 20 862 50 HELIX 23 862 31 COLOUR_TEXT_REGION 23 862 31 862 50 HELIX 46 862 52 COLOUR_TEXT_REGION 46 862 52 862 50 HELIX 56 862 64 COLOUR_TEXT_REGION 56 862 64 862 50 HELIX 79 862 85 COLOUR_TEXT_REGION 79 862 85 862 50 HELIX 89 862 97 COLOUR_TEXT_REGION 89 862 97 862 50 HELIX 112 862 118 COLOUR_TEXT_REGION 112 862 118 862 50 HELIX 122 862 130 COLOUR_TEXT_REGION 122 862 130 862 50 HELIX 145 862 151 COLOUR_TEXT_REGION 145 862 151 862 50 HELIX 155 862 162 COLOUR_TEXT_REGION 155 862 162 862 50 HELIX 13 867 20 COLOUR_TEXT_REGION 13 867 20 867 50 HELIX 23 867 31 COLOUR_TEXT_REGION 23 867 31 867 50 HELIX 46 867 52 COLOUR_TEXT_REGION 46 867 52 867 50 HELIX 56 867 64 COLOUR_TEXT_REGION 56 867 64 867 50 HELIX 79 867 85 COLOUR_TEXT_REGION 79 867 85 867 50 HELIX 88 867 97 COLOUR_TEXT_REGION 88 867 97 867 50 HELIX 112 867 118 COLOUR_TEXT_REGION 112 867 118 867 50 HELIX 122 867 130 COLOUR_TEXT_REGION 122 867 130 867 50 HELIX 145 867 151 COLOUR_TEXT_REGION 145 867 151 867 50 HELIX 155 867 162 COLOUR_TEXT_REGION 155 867 162 867 50 HELIX 12 868 19 COLOUR_TEXT_REGION 12 868 19 868 50 HELIX 23 868 31 COLOUR_TEXT_REGION 23 868 31 868 50 HELIX 46 868 52 COLOUR_TEXT_REGION 46 868 52 868 50 HELIX 56 868 64 COLOUR_TEXT_REGION 56 868 64 868 50 HELIX 79 868 85 COLOUR_TEXT_REGION 79 868 85 868 50 HELIX 89 868 97 COLOUR_TEXT_REGION 89 868 97 868 50 HELIX 112 868 118 COLOUR_TEXT_REGION 112 868 118 868 50 HELIX 122 868 130 COLOUR_TEXT_REGION 122 868 130 868 50 HELIX 145 868 151 COLOUR_TEXT_REGION 145 868 151 868 50 HELIX 155 868 163 COLOUR_TEXT_REGION 155 868 163 868 50