SILENT_MODE BLOCK_FILE jp_0l380PG.concise.blc MAX_NSEQ 324 MAX_INPUT_LEN 326 OUTPUT_FILE jp_0l380PG.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 232 313 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 314 232 323 H SPACE SUB_CHARS 1 314 232 323 E SPACE SUB_CHARS 1 314 232 323 - SPACE STRAND 4 317 10 COLOUR_TEXT_REGION 4 317 10 317 51 STRAND 72 317 78 COLOUR_TEXT_REGION 72 317 78 317 51 STRAND 215 317 221 COLOUR_TEXT_REGION 215 317 221 317 51 HELIX 17 317 26 COLOUR_TEXT_REGION 17 317 26 317 50 HELIX 34 317 57 COLOUR_TEXT_REGION 34 317 57 317 50 HELIX 82 317 151 COLOUR_TEXT_REGION 82 317 151 317 50 HELIX 170 317 186 COLOUR_TEXT_REGION 170 317 186 317 50 HELIX 193 317 206 COLOUR_TEXT_REGION 193 317 206 317 50 STRAND 3 322 10 COLOUR_TEXT_REGION 3 322 10 322 51 STRAND 72 322 78 COLOUR_TEXT_REGION 72 322 78 322 51 STRAND 215 322 221 COLOUR_TEXT_REGION 215 322 221 322 51 HELIX 16 322 25 COLOUR_TEXT_REGION 16 322 25 322 50 HELIX 34 322 57 COLOUR_TEXT_REGION 34 322 57 322 50 HELIX 82 322 150 COLOUR_TEXT_REGION 82 322 150 322 50 HELIX 170 322 186 COLOUR_TEXT_REGION 170 322 186 322 50 HELIX 193 322 206 COLOUR_TEXT_REGION 193 322 206 322 50 STRAND 5 323 9 COLOUR_TEXT_REGION 5 323 9 323 51 STRAND 72 323 79 COLOUR_TEXT_REGION 72 323 79 323 51 STRAND 215 323 221 COLOUR_TEXT_REGION 215 323 221 323 51 HELIX 19 323 26 COLOUR_TEXT_REGION 19 323 26 323 50 HELIX 34 323 57 COLOUR_TEXT_REGION 34 323 57 323 50 HELIX 82 323 151 COLOUR_TEXT_REGION 82 323 151 323 50 HELIX 169 323 185 COLOUR_TEXT_REGION 169 323 185 323 50 HELIX 193 323 206 COLOUR_TEXT_REGION 193 323 206 323 50