SILENT_MODE BLOCK_FILE jp_1JMTcwA.concise.blc MAX_NSEQ 757 MAX_INPUT_LEN 759 OUTPUT_FILE jp_1JMTcwA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 364 746 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 747 364 756 H SPACE SUB_CHARS 1 747 364 756 E SPACE SUB_CHARS 1 747 364 756 - SPACE STRAND 5 750 10 COLOUR_TEXT_REGION 5 750 10 750 51 STRAND 16 750 21 COLOUR_TEXT_REGION 16 750 21 750 51 STRAND 26 750 28 COLOUR_TEXT_REGION 26 750 28 750 51 STRAND 31 750 35 COLOUR_TEXT_REGION 31 750 35 750 51 STRAND 89 750 90 COLOUR_TEXT_REGION 89 750 90 750 51 STRAND 105 750 109 COLOUR_TEXT_REGION 105 750 109 750 51 STRAND 113 750 116 COLOUR_TEXT_REGION 113 750 116 750 51 STRAND 132 750 135 COLOUR_TEXT_REGION 132 750 135 750 51 STRAND 178 750 182 COLOUR_TEXT_REGION 178 750 182 750 51 STRAND 237 750 240 COLOUR_TEXT_REGION 237 750 240 750 51 HELIX 46 750 51 COLOUR_TEXT_REGION 46 750 51 750 50 HELIX 62 750 65 COLOUR_TEXT_REGION 62 750 65 750 50 HELIX 71 750 74 COLOUR_TEXT_REGION 71 750 74 750 50 HELIX 118 750 127 COLOUR_TEXT_REGION 118 750 127 750 50 HELIX 146 750 168 COLOUR_TEXT_REGION 146 750 168 750 50 HELIX 189 750 201 COLOUR_TEXT_REGION 189 750 201 750 50 HELIX 219 750 229 COLOUR_TEXT_REGION 219 750 229 750 50 HELIX 246 750 254 COLOUR_TEXT_REGION 246 750 254 750 50 HELIX 309 750 317 COLOUR_TEXT_REGION 309 750 317 750 50 HELIX 321 750 347 COLOUR_TEXT_REGION 321 750 347 750 50 HELIX 351 750 362 COLOUR_TEXT_REGION 351 750 362 750 50 STRAND 5 755 10 COLOUR_TEXT_REGION 5 755 10 755 51 STRAND 17 755 21 COLOUR_TEXT_REGION 17 755 21 755 51 STRAND 26 755 27 COLOUR_TEXT_REGION 26 755 27 755 51 STRAND 31 755 35 COLOUR_TEXT_REGION 31 755 35 755 51 STRAND 56 755 58 COLOUR_TEXT_REGION 56 755 58 755 51 STRAND 89 755 89 COLOUR_TEXT_REGION 89 755 89 755 51 STRAND 105 755 109 COLOUR_TEXT_REGION 105 755 109 755 51 STRAND 113 755 116 COLOUR_TEXT_REGION 113 755 116 755 51 STRAND 132 755 135 COLOUR_TEXT_REGION 132 755 135 755 51 STRAND 178 755 183 COLOUR_TEXT_REGION 178 755 183 755 51 STRAND 238 755 240 COLOUR_TEXT_REGION 238 755 240 755 51 STRAND 273 755 274 COLOUR_TEXT_REGION 273 755 274 755 51 HELIX 46 755 51 COLOUR_TEXT_REGION 46 755 51 755 50 HELIX 71 755 74 COLOUR_TEXT_REGION 71 755 74 755 50 HELIX 118 755 127 COLOUR_TEXT_REGION 118 755 127 755 50 HELIX 146 755 168 COLOUR_TEXT_REGION 146 755 168 755 50 HELIX 189 755 200 COLOUR_TEXT_REGION 189 755 200 755 50 HELIX 218 755 229 COLOUR_TEXT_REGION 218 755 229 755 50 HELIX 246 755 254 COLOUR_TEXT_REGION 246 755 254 755 50 HELIX 265 755 268 COLOUR_TEXT_REGION 265 755 268 755 50 HELIX 309 755 316 COLOUR_TEXT_REGION 309 755 316 755 50 HELIX 323 755 348 COLOUR_TEXT_REGION 323 755 348 755 50 HELIX 351 755 362 COLOUR_TEXT_REGION 351 755 362 755 50 STRAND 5 756 11 COLOUR_TEXT_REGION 5 756 11 756 51 STRAND 16 756 22 COLOUR_TEXT_REGION 16 756 22 756 51 STRAND 27 756 28 COLOUR_TEXT_REGION 27 756 28 756 51 STRAND 31 756 35 COLOUR_TEXT_REGION 31 756 35 756 51 STRAND 88 756 90 COLOUR_TEXT_REGION 88 756 90 756 51 STRAND 106 756 109 COLOUR_TEXT_REGION 106 756 109 756 51 STRAND 113 756 116 COLOUR_TEXT_REGION 113 756 116 756 51 STRAND 132 756 135 COLOUR_TEXT_REGION 132 756 135 756 51 STRAND 179 756 179 COLOUR_TEXT_REGION 179 756 179 756 51 STRAND 237 756 240 COLOUR_TEXT_REGION 237 756 240 756 51 STRAND 259 756 261 COLOUR_TEXT_REGION 259 756 261 756 51 HELIX 46 756 53 COLOUR_TEXT_REGION 46 756 53 756 50 HELIX 61 756 66 COLOUR_TEXT_REGION 61 756 66 756 50 HELIX 72 756 74 COLOUR_TEXT_REGION 72 756 74 756 50 HELIX 118 756 128 COLOUR_TEXT_REGION 118 756 128 756 50 HELIX 146 756 168 COLOUR_TEXT_REGION 146 756 168 756 50 HELIX 189 756 201 COLOUR_TEXT_REGION 189 756 201 756 50 HELIX 219 756 228 COLOUR_TEXT_REGION 219 756 228 756 50 HELIX 246 756 255 COLOUR_TEXT_REGION 246 756 255 756 50 HELIX 309 756 327 COLOUR_TEXT_REGION 309 756 327 756 50 HELIX 332 756 347 COLOUR_TEXT_REGION 332 756 347 756 50 HELIX 351 756 362 COLOUR_TEXT_REGION 351 756 362 756 50