SILENT_MODE BLOCK_FILE jp_qu_rhPv.concise.blc MAX_NSEQ 54 MAX_INPUT_LEN 56 OUTPUT_FILE jp_qu_rhPv.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 288 43 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 44 288 53 H SPACE SUB_CHARS 1 44 288 53 E SPACE SUB_CHARS 1 44 288 53 - SPACE STRAND 43 47 49 COLOUR_TEXT_REGION 43 47 49 47 51 STRAND 57 47 63 COLOUR_TEXT_REGION 57 47 63 47 51 STRAND 101 47 107 COLOUR_TEXT_REGION 101 47 107 47 51 STRAND 113 47 119 COLOUR_TEXT_REGION 113 47 119 47 51 STRAND 157 47 163 COLOUR_TEXT_REGION 157 47 163 47 51 STRAND 168 47 174 COLOUR_TEXT_REGION 168 47 174 47 51 STRAND 216 47 221 COLOUR_TEXT_REGION 216 47 221 47 51 STRAND 228 47 233 COLOUR_TEXT_REGION 228 47 233 47 51 STRAND 245 47 246 COLOUR_TEXT_REGION 245 47 246 47 51 STRAND 266 47 273 COLOUR_TEXT_REGION 266 47 273 47 51 STRAND 279 47 283 COLOUR_TEXT_REGION 279 47 283 47 51 HELIX 5 47 18 COLOUR_TEXT_REGION 5 47 18 47 50 HELIX 25 47 35 COLOUR_TEXT_REGION 25 47 35 47 50 HELIX 70 47 76 COLOUR_TEXT_REGION 70 47 76 47 50 HELIX 87 47 96 COLOUR_TEXT_REGION 87 47 96 47 50 HELIX 128 47 133 COLOUR_TEXT_REGION 128 47 133 47 50 HELIX 139 47 150 COLOUR_TEXT_REGION 139 47 150 47 50 HELIX 188 47 197 COLOUR_TEXT_REGION 188 47 197 47 50 HELIX 205 47 211 COLOUR_TEXT_REGION 205 47 211 47 50 HELIX 249 47 257 COLOUR_TEXT_REGION 249 47 257 47 50 STRAND 43 52 49 COLOUR_TEXT_REGION 43 52 49 52 51 STRAND 57 52 63 COLOUR_TEXT_REGION 57 52 63 52 51 STRAND 101 52 107 COLOUR_TEXT_REGION 101 52 107 52 51 STRAND 113 52 119 COLOUR_TEXT_REGION 113 52 119 52 51 STRAND 157 52 163 COLOUR_TEXT_REGION 157 52 163 52 51 STRAND 168 52 174 COLOUR_TEXT_REGION 168 52 174 52 51 STRAND 216 52 221 COLOUR_TEXT_REGION 216 52 221 52 51 STRAND 228 52 233 COLOUR_TEXT_REGION 228 52 233 52 51 STRAND 245 52 246 COLOUR_TEXT_REGION 245 52 246 52 51 STRAND 266 52 273 COLOUR_TEXT_REGION 266 52 273 52 51 STRAND 279 52 283 COLOUR_TEXT_REGION 279 52 283 52 51 HELIX 5 52 18 COLOUR_TEXT_REGION 5 52 18 52 50 HELIX 25 52 35 COLOUR_TEXT_REGION 25 52 35 52 50 HELIX 70 52 76 COLOUR_TEXT_REGION 70 52 76 52 50 HELIX 87 52 96 COLOUR_TEXT_REGION 87 52 96 52 50 HELIX 126 52 132 COLOUR_TEXT_REGION 126 52 132 52 50 HELIX 139 52 150 COLOUR_TEXT_REGION 139 52 150 52 50 HELIX 188 52 197 COLOUR_TEXT_REGION 188 52 197 52 50 HELIX 205 52 211 COLOUR_TEXT_REGION 205 52 211 52 50 HELIX 249 52 257 COLOUR_TEXT_REGION 249 52 257 52 50 STRAND 43 53 49 COLOUR_TEXT_REGION 43 53 49 53 51 STRAND 57 53 64 COLOUR_TEXT_REGION 57 53 64 53 51 STRAND 72 53 73 COLOUR_TEXT_REGION 72 53 73 53 51 STRAND 101 53 103 COLOUR_TEXT_REGION 101 53 103 53 51 STRAND 113 53 119 COLOUR_TEXT_REGION 113 53 119 53 51 STRAND 157 53 163 COLOUR_TEXT_REGION 157 53 163 53 51 STRAND 168 53 173 COLOUR_TEXT_REGION 168 53 173 53 51 STRAND 216 53 221 COLOUR_TEXT_REGION 216 53 221 53 51 STRAND 228 53 233 COLOUR_TEXT_REGION 228 53 233 53 51 STRAND 245 53 246 COLOUR_TEXT_REGION 245 53 246 53 51 STRAND 266 53 273 COLOUR_TEXT_REGION 266 53 273 53 51 STRAND 279 53 283 COLOUR_TEXT_REGION 279 53 283 53 51 HELIX 5 53 19 COLOUR_TEXT_REGION 5 53 19 53 50 HELIX 25 53 34 COLOUR_TEXT_REGION 25 53 34 53 50 HELIX 74 53 74 COLOUR_TEXT_REGION 74 53 74 53 50 HELIX 87 53 96 COLOUR_TEXT_REGION 87 53 96 53 50 HELIX 128 53 134 COLOUR_TEXT_REGION 128 53 134 53 50 HELIX 139 53 150 COLOUR_TEXT_REGION 139 53 150 53 50 HELIX 188 53 197 COLOUR_TEXT_REGION 188 53 197 53 50 HELIX 205 53 211 COLOUR_TEXT_REGION 205 53 211 53 50 HELIX 249 53 257 COLOUR_TEXT_REGION 249 53 257 53 50