SILENT_MODE BLOCK_FILE jp_XlkobkA.concise.blc MAX_NSEQ 100 MAX_INPUT_LEN 102 OUTPUT_FILE jp_XlkobkA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 175 89 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 90 175 99 H SPACE SUB_CHARS 1 90 175 99 E SPACE SUB_CHARS 1 90 175 99 - SPACE STRAND 44 93 49 COLOUR_TEXT_REGION 44 93 49 93 51 STRAND 66 93 68 COLOUR_TEXT_REGION 66 93 68 93 51 STRAND 76 93 78 COLOUR_TEXT_REGION 76 93 78 93 51 STRAND 82 93 86 COLOUR_TEXT_REGION 82 93 86 93 51 STRAND 92 93 99 COLOUR_TEXT_REGION 92 93 99 93 51 STRAND 146 93 152 COLOUR_TEXT_REGION 146 93 152 93 51 HELIX 3 93 29 COLOUR_TEXT_REGION 3 93 29 93 50 HELIX 102 93 109 COLOUR_TEXT_REGION 102 93 109 93 50 HELIX 119 93 138 COLOUR_TEXT_REGION 119 93 138 93 50 HELIX 163 93 173 COLOUR_TEXT_REGION 163 93 173 93 50 STRAND 44 98 49 COLOUR_TEXT_REGION 44 98 49 98 51 STRAND 66 98 68 COLOUR_TEXT_REGION 66 98 68 98 51 STRAND 77 98 78 COLOUR_TEXT_REGION 77 98 78 98 51 STRAND 82 98 86 COLOUR_TEXT_REGION 82 98 86 98 51 STRAND 92 98 99 COLOUR_TEXT_REGION 92 98 99 98 51 STRAND 146 98 152 COLOUR_TEXT_REGION 146 98 152 98 51 HELIX 2 98 18 COLOUR_TEXT_REGION 2 98 18 98 50 HELIX 20 98 29 COLOUR_TEXT_REGION 20 98 29 98 50 HELIX 102 98 109 COLOUR_TEXT_REGION 102 98 109 98 50 HELIX 119 98 138 COLOUR_TEXT_REGION 119 98 138 98 50 HELIX 163 98 173 COLOUR_TEXT_REGION 163 98 173 98 50 STRAND 44 99 49 COLOUR_TEXT_REGION 44 99 49 99 51 STRAND 67 99 68 COLOUR_TEXT_REGION 67 99 68 99 51 STRAND 76 99 77 COLOUR_TEXT_REGION 76 99 77 99 51 STRAND 82 99 86 COLOUR_TEXT_REGION 82 99 86 99 51 STRAND 92 99 98 COLOUR_TEXT_REGION 92 99 98 99 51 STRAND 147 99 152 COLOUR_TEXT_REGION 147 99 152 99 51 HELIX 4 99 30 COLOUR_TEXT_REGION 4 99 30 99 50 HELIX 102 99 110 COLOUR_TEXT_REGION 102 99 110 99 50 HELIX 119 99 138 COLOUR_TEXT_REGION 119 99 138 99 50 HELIX 141 99 142 COLOUR_TEXT_REGION 141 99 142 99 50 HELIX 164 99 173 COLOUR_TEXT_REGION 164 99 173 99 50