SILENT_MODE BLOCK_FILE jp_ewzbjsF.concise.blc MAX_NSEQ 560 MAX_INPUT_LEN 562 OUTPUT_FILE jp_ewzbjsF.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 444 549 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 550 444 559 H SPACE SUB_CHARS 1 550 444 559 E SPACE SUB_CHARS 1 550 444 559 - SPACE HELIX 3 553 10 COLOUR_TEXT_REGION 3 553 10 553 50 HELIX 16 553 55 COLOUR_TEXT_REGION 16 553 55 553 50 HELIX 60 553 84 COLOUR_TEXT_REGION 60 553 84 553 50 HELIX 93 553 101 COLOUR_TEXT_REGION 93 553 101 553 50 HELIX 110 553 125 COLOUR_TEXT_REGION 110 553 125 553 50 HELIX 132 553 149 COLOUR_TEXT_REGION 132 553 149 553 50 HELIX 158 553 175 COLOUR_TEXT_REGION 158 553 175 553 50 HELIX 177 553 190 COLOUR_TEXT_REGION 177 553 190 553 50 HELIX 194 553 216 COLOUR_TEXT_REGION 194 553 216 553 50 HELIX 234 553 265 COLOUR_TEXT_REGION 234 553 265 553 50 HELIX 274 553 291 COLOUR_TEXT_REGION 274 553 291 553 50 HELIX 302 553 308 COLOUR_TEXT_REGION 302 553 308 553 50 HELIX 314 553 334 COLOUR_TEXT_REGION 314 553 334 553 50 HELIX 340 553 360 COLOUR_TEXT_REGION 340 553 360 553 50 HELIX 368 553 399 COLOUR_TEXT_REGION 368 553 399 553 50 HELIX 406 553 423 COLOUR_TEXT_REGION 406 553 423 553 50 HELIX 428 553 439 COLOUR_TEXT_REGION 428 553 439 553 50 STRAND 221 558 224 COLOUR_TEXT_REGION 221 558 224 558 51 HELIX 3 558 10 COLOUR_TEXT_REGION 3 558 10 558 50 HELIX 17 558 56 COLOUR_TEXT_REGION 17 558 56 558 50 HELIX 61 558 84 COLOUR_TEXT_REGION 61 558 84 558 50 HELIX 93 558 101 COLOUR_TEXT_REGION 93 558 101 558 50 HELIX 109 558 124 COLOUR_TEXT_REGION 109 558 124 558 50 HELIX 132 558 148 COLOUR_TEXT_REGION 132 558 148 558 50 HELIX 157 558 175 COLOUR_TEXT_REGION 157 558 175 558 50 HELIX 177 558 190 COLOUR_TEXT_REGION 177 558 190 558 50 HELIX 195 558 216 COLOUR_TEXT_REGION 195 558 216 558 50 HELIX 233 558 266 COLOUR_TEXT_REGION 233 558 266 558 50 HELIX 274 558 292 COLOUR_TEXT_REGION 274 558 292 558 50 HELIX 304 558 307 COLOUR_TEXT_REGION 304 558 307 558 50 HELIX 313 558 333 COLOUR_TEXT_REGION 313 558 333 558 50 HELIX 339 558 361 COLOUR_TEXT_REGION 339 558 361 558 50 HELIX 369 558 400 COLOUR_TEXT_REGION 369 558 400 558 50 HELIX 406 558 423 COLOUR_TEXT_REGION 406 558 423 558 50 HELIX 428 558 438 COLOUR_TEXT_REGION 428 558 438 558 50 HELIX 3 559 11 COLOUR_TEXT_REGION 3 559 11 559 50 HELIX 16 559 55 COLOUR_TEXT_REGION 16 559 55 559 50 HELIX 59 559 85 COLOUR_TEXT_REGION 59 559 85 559 50 HELIX 93 559 101 COLOUR_TEXT_REGION 93 559 101 559 50 HELIX 111 559 125 COLOUR_TEXT_REGION 111 559 125 559 50 HELIX 132 559 150 COLOUR_TEXT_REGION 132 559 150 559 50 HELIX 159 559 175 COLOUR_TEXT_REGION 159 559 175 559 50 HELIX 178 559 178 COLOUR_TEXT_REGION 178 559 178 559 50 HELIX 180 559 189 COLOUR_TEXT_REGION 180 559 189 559 50 HELIX 194 559 216 COLOUR_TEXT_REGION 194 559 216 559 50 HELIX 236 559 262 COLOUR_TEXT_REGION 236 559 262 559 50 HELIX 274 559 290 COLOUR_TEXT_REGION 274 559 290 559 50 HELIX 302 559 309 COLOUR_TEXT_REGION 302 559 309 559 50 HELIX 320 559 336 COLOUR_TEXT_REGION 320 559 336 559 50 HELIX 340 559 360 COLOUR_TEXT_REGION 340 559 360 559 50 HELIX 367 559 371 COLOUR_TEXT_REGION 367 559 371 559 50 HELIX 373 559 399 COLOUR_TEXT_REGION 373 559 399 559 50 HELIX 405 559 423 COLOUR_TEXT_REGION 405 559 423 559 50 HELIX 429 559 439 COLOUR_TEXT_REGION 429 559 439 559 50