SILENT_MODE BLOCK_FILE jp_aJ8XflD.concise.blc MAX_NSEQ 550 MAX_INPUT_LEN 552 OUTPUT_FILE jp_aJ8XflD.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 276 539 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 540 276 549 H SPACE SUB_CHARS 1 540 276 549 E SPACE SUB_CHARS 1 540 276 549 - SPACE STRAND 87 543 91 COLOUR_TEXT_REGION 87 543 91 543 51 STRAND 110 543 110 COLOUR_TEXT_REGION 110 543 110 543 51 STRAND 176 543 182 COLOUR_TEXT_REGION 176 543 182 543 51 STRAND 188 543 191 COLOUR_TEXT_REGION 188 543 191 543 51 STRAND 205 543 205 COLOUR_TEXT_REGION 205 543 205 543 51 STRAND 211 543 214 COLOUR_TEXT_REGION 211 543 214 543 51 STRAND 234 543 236 COLOUR_TEXT_REGION 234 543 236 543 51 HELIX 4 543 16 COLOUR_TEXT_REGION 4 543 16 543 50 HELIX 31 543 48 COLOUR_TEXT_REGION 31 543 48 543 50 HELIX 53 543 62 COLOUR_TEXT_REGION 53 543 62 543 50 HELIX 74 543 83 COLOUR_TEXT_REGION 74 543 83 543 50 HELIX 98 543 105 COLOUR_TEXT_REGION 98 543 105 543 50 HELIX 129 543 134 COLOUR_TEXT_REGION 129 543 134 543 50 HELIX 143 543 157 COLOUR_TEXT_REGION 143 543 157 543 50 HELIX 162 543 175 COLOUR_TEXT_REGION 162 543 175 543 50 HELIX 198 543 204 COLOUR_TEXT_REGION 198 543 204 543 50 HELIX 217 543 221 COLOUR_TEXT_REGION 217 543 221 543 50 HELIX 240 543 260 COLOUR_TEXT_REGION 240 543 260 543 50 STRAND 87 548 91 COLOUR_TEXT_REGION 87 548 91 548 51 STRAND 109 548 110 COLOUR_TEXT_REGION 109 548 110 548 51 STRAND 176 548 182 COLOUR_TEXT_REGION 176 548 182 548 51 STRAND 188 548 191 COLOUR_TEXT_REGION 188 548 191 548 51 STRAND 203 548 205 COLOUR_TEXT_REGION 203 548 205 548 51 STRAND 211 548 213 COLOUR_TEXT_REGION 211 548 213 548 51 STRAND 234 548 236 COLOUR_TEXT_REGION 234 548 236 548 51 HELIX 3 548 16 COLOUR_TEXT_REGION 3 548 16 548 50 HELIX 31 548 48 COLOUR_TEXT_REGION 31 548 48 548 50 HELIX 53 548 62 COLOUR_TEXT_REGION 53 548 62 548 50 HELIX 74 548 83 COLOUR_TEXT_REGION 74 548 83 548 50 HELIX 98 548 105 COLOUR_TEXT_REGION 98 548 105 548 50 HELIX 130 548 134 COLOUR_TEXT_REGION 130 548 134 548 50 HELIX 143 548 157 COLOUR_TEXT_REGION 143 548 157 548 50 HELIX 162 548 175 COLOUR_TEXT_REGION 162 548 175 548 50 HELIX 198 548 202 COLOUR_TEXT_REGION 198 548 202 548 50 HELIX 217 548 221 COLOUR_TEXT_REGION 217 548 221 548 50 HELIX 237 548 237 COLOUR_TEXT_REGION 237 548 237 548 50 HELIX 240 548 260 COLOUR_TEXT_REGION 240 548 260 548 50 STRAND 87 549 91 COLOUR_TEXT_REGION 87 549 91 549 51 STRAND 111 549 111 COLOUR_TEXT_REGION 111 549 111 549 51 STRAND 179 549 183 COLOUR_TEXT_REGION 179 549 183 549 51 STRAND 188 549 191 COLOUR_TEXT_REGION 188 549 191 549 51 STRAND 211 549 214 COLOUR_TEXT_REGION 211 549 214 549 51 STRAND 220 549 222 COLOUR_TEXT_REGION 220 549 222 549 51 STRAND 233 549 236 COLOUR_TEXT_REGION 233 549 236 549 51 HELIX 7 549 17 COLOUR_TEXT_REGION 7 549 17 549 50 HELIX 31 549 49 COLOUR_TEXT_REGION 31 549 49 549 50 HELIX 53 549 62 COLOUR_TEXT_REGION 53 549 62 549 50 HELIX 73 549 83 COLOUR_TEXT_REGION 73 549 83 549 50 HELIX 98 549 104 COLOUR_TEXT_REGION 98 549 104 549 50 HELIX 128 549 135 COLOUR_TEXT_REGION 128 549 135 549 50 HELIX 143 549 157 COLOUR_TEXT_REGION 143 549 157 549 50 HELIX 162 549 177 COLOUR_TEXT_REGION 162 549 177 549 50 HELIX 193 549 195 COLOUR_TEXT_REGION 193 549 195 549 50 HELIX 198 549 205 COLOUR_TEXT_REGION 198 549 205 549 50 HELIX 218 549 219 COLOUR_TEXT_REGION 218 549 219 549 50 HELIX 240 549 259 COLOUR_TEXT_REGION 240 549 259 549 50