SILENT_MODE
BLOCK_FILE jp_D4jUKyK.concise.blc
MAX_NSEQ 506
MAX_INPUT_LEN 508
OUTPUT_FILE jp_D4jUKyK.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 130 495   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 496 130 505 H SPACE
SUB_CHARS 1 496 130 505 E SPACE
SUB_CHARS 1 496 130 505 - SPACE
STRAND 20 499 26
COLOUR_TEXT_REGION 20 499 26 499 51
STRAND 31 499 33
COLOUR_TEXT_REGION 31 499 33 499 51
STRAND 64 499 66
COLOUR_TEXT_REGION 64 499 66 499 51
STRAND 70 499 75
COLOUR_TEXT_REGION 70 499 75 499 51
STRAND 80 499 85
COLOUR_TEXT_REGION 80 499 85 499 51
STRAND 90 499 95
COLOUR_TEXT_REGION 90 499 95 499 51
STRAND 99 499 105
COLOUR_TEXT_REGION 99 499 105 499 51
HELIX 2 499 11
COLOUR_TEXT_REGION 2 499 11 499 50
HELIX 43 499 53
COLOUR_TEXT_REGION 43 499 53 499 50
HELIX 111 499 127
COLOUR_TEXT_REGION 111 499 127 499 50
STRAND 21 504 25
COLOUR_TEXT_REGION 21 504 25 504 51
STRAND 31 504 33
COLOUR_TEXT_REGION 31 504 33 504 51
STRAND 64 504 66
COLOUR_TEXT_REGION 64 504 66 504 51
STRAND 69 504 76
COLOUR_TEXT_REGION 69 504 76 504 51
STRAND 80 504 85
COLOUR_TEXT_REGION 80 504 85 504 51
STRAND 90 504 95
COLOUR_TEXT_REGION 90 504 95 504 51
STRAND 99 504 105
COLOUR_TEXT_REGION 99 504 105 504 51
HELIX 2 504 10
COLOUR_TEXT_REGION 2 504 10 504 50
HELIX 43 504 52
COLOUR_TEXT_REGION 43 504 52 504 50
HELIX 111 504 127
COLOUR_TEXT_REGION 111 504 127 504 50
STRAND 19 505 26
COLOUR_TEXT_REGION 19 505 26 505 51
STRAND 31 505 33
COLOUR_TEXT_REGION 31 505 33 505 51
STRAND 64 505 66
COLOUR_TEXT_REGION 64 505 66 505 51
STRAND 70 505 75
COLOUR_TEXT_REGION 70 505 75 505 51
STRAND 80 505 85
COLOUR_TEXT_REGION 80 505 85 505 51
STRAND 91 505 95
COLOUR_TEXT_REGION 91 505 95 505 51
STRAND 99 505 105
COLOUR_TEXT_REGION 99 505 105 505 51
HELIX 3 505 13
COLOUR_TEXT_REGION 3 505 13 505 50
HELIX 43 505 54
COLOUR_TEXT_REGION 43 505 54 505 50
HELIX 111 505 127
COLOUR_TEXT_REGION 111 505 127 505 50