SILENT_MODE BLOCK_FILE jp_zMJ1aAL.concise.blc MAX_NSEQ 393 MAX_INPUT_LEN 395 OUTPUT_FILE jp_zMJ1aAL.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 122 382 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 383 122 392 H SPACE SUB_CHARS 1 383 122 392 E SPACE SUB_CHARS 1 383 122 392 - SPACE STRAND 5 386 10 COLOUR_TEXT_REGION 5 386 10 386 51 STRAND 16 386 20 COLOUR_TEXT_REGION 16 386 20 386 51 STRAND 23 386 27 COLOUR_TEXT_REGION 23 386 27 386 51 STRAND 36 386 44 COLOUR_TEXT_REGION 36 386 44 386 51 STRAND 52 386 57 COLOUR_TEXT_REGION 52 386 57 386 51 STRAND 70 386 74 COLOUR_TEXT_REGION 70 386 74 386 51 STRAND 86 386 94 COLOUR_TEXT_REGION 86 386 94 386 51 STRAND 98 386 106 COLOUR_TEXT_REGION 98 386 106 386 51 STRAND 112 386 118 COLOUR_TEXT_REGION 112 386 118 386 51 HELIX 62 386 66 COLOUR_TEXT_REGION 62 386 66 386 50 HELIX 69 386 69 COLOUR_TEXT_REGION 69 386 69 386 50 STRAND 5 391 10 COLOUR_TEXT_REGION 5 391 10 391 51 STRAND 16 391 20 COLOUR_TEXT_REGION 16 391 20 391 51 STRAND 23 391 28 COLOUR_TEXT_REGION 23 391 28 391 51 STRAND 36 391 44 COLOUR_TEXT_REGION 36 391 44 391 51 STRAND 51 391 58 COLOUR_TEXT_REGION 51 391 58 391 51 STRAND 70 391 74 COLOUR_TEXT_REGION 70 391 74 391 51 STRAND 86 391 94 COLOUR_TEXT_REGION 86 391 94 391 51 STRAND 99 391 106 COLOUR_TEXT_REGION 99 391 106 391 51 STRAND 111 391 118 COLOUR_TEXT_REGION 111 391 118 391 51 HELIX 62 391 65 COLOUR_TEXT_REGION 62 391 65 391 50 STRAND 5 392 11 COLOUR_TEXT_REGION 5 392 11 392 51 STRAND 17 392 18 COLOUR_TEXT_REGION 17 392 18 392 51 STRAND 23 392 26 COLOUR_TEXT_REGION 23 392 26 392 51 STRAND 38 392 43 COLOUR_TEXT_REGION 38 392 43 392 51 STRAND 73 392 74 COLOUR_TEXT_REGION 73 392 74 392 51 STRAND 87 392 94 COLOUR_TEXT_REGION 87 392 94 392 51 STRAND 97 392 106 COLOUR_TEXT_REGION 97 392 106 392 51 STRAND 112 392 118 COLOUR_TEXT_REGION 112 392 118 392 51 HELIX 62 392 72 COLOUR_TEXT_REGION 62 392 72 392 50