QUERY                  : VLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDI : QUERY 
UniRef90_Q6A2B1        : ILEEGPLVKVKTNIGVWEPGWRILVWGRGYAAVKHAESGRVVWVPARKVKPDL : UniRef90_Q6A2B1
UniRef90_Q04099        : IIEEGPPVRIKIDNGLWESGWSILVWGRGYAVVKNKESGNIIWVPSRKVKPE- : UniRef90_Q04099
UniRef90_Q05532        : ----GPAVLVRDHLGAWQGGWHLMTVGRGYAV---GQDGTVKWVPARWVKP-- : UniRef90_Q05532
UniRef90_UPI0002B412F4 : -LEEGPQVMVKNELGKWERGWRLVLTGRGYAAVKKEDSDNVL----------- : UniRef90_UPI0002B412F4
UniRef90_UPI000395BA70 : -LQHRPPVLVRDETQKIMGPFELVTWGRGYACISSPQG--LRWIPQRWVKP-- : UniRef90_UPI000395BA70
UniRef90_UPI0002B4D88E : LLKERPPVLVRDESRAITGPFPLITWGRGYACVSTGQGPK--WIPGKYVKP-- : UniRef90_UPI0002B4D88E
UniRef90_Q8AGY0        : ---------------AWRGPAQLITWGRGYAAIQL--PDKVLWVPGRCVRP-- : UniRef90_Q8AGY0
UniRef90_UPI000395578F : --SQRPPVLIRDETWQTKGPYELVTWGHGYACVSTPSGPR--WIPQKWVKP-- : UniRef90_UPI000395578F
UniRef90_R7VSN7        : ----GAKVLVRDRTGQWTGPHELLTWGRGYACVSTDQGPQ--WLPARNVKP-- : UniRef90_R7VSN7

                       : 1---------11--------21--------31--------41--------51- :
OrigSeq                : VLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDI : OrigSeq

Jnet                   : -------EEEE----------EEEEEE--EEEEE-----EEEEEE-------- : Jnet
jhmm                   : ------EEEEE----------EEEEEE--EEEEE------EEEEE-------- : jhmm
jpssm                  : -------EEEEE---------EEEEEE--EEEEEE----EEEEEE-------- : jpssm

Lupas 14               : ----------------------------------------------------- : Lupas 14
Lupas 21               : ----------------------------------------------------- : Lupas 21
Lupas 28               : ----------------------------------------------------- : Lupas 28

Jnet_25                : -----B-B-B------B--BB-BBBBBBBBBBB-------BBBBBB--B---- : Jnet_25
Jnet_5                 : -------B-B------------BBB-B-B-BBB-------B-BB--------- : Jnet_5
Jnet_0                 : --------------------------B-------------------------- : Jnet_0
Jnet Rel               : 99988713554136777777448998531368871688518988536778889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.