SILENT_MODE
BLOCK_FILE jp_CSEPGJL.concise.blc
MAX_NSEQ 376
MAX_INPUT_LEN 378
OUTPUT_FILE jp_CSEPGJL.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 95 365   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 366 95 375 H SPACE
SUB_CHARS 1 366 95 375 E SPACE
SUB_CHARS 1 366 95 375 - SPACE
STRAND 11 369 14
COLOUR_TEXT_REGION 11 369 14 369 51
STRAND 36 369 42
COLOUR_TEXT_REGION 36 369 42 369 51
STRAND 52 369 56
COLOUR_TEXT_REGION 52 369 56 369 51
STRAND 68 369 72
COLOUR_TEXT_REGION 68 369 72 369 51
STRAND 77 369 82
COLOUR_TEXT_REGION 77 369 82 369 51
STRAND 85 369 90
COLOUR_TEXT_REGION 85 369 90 369 51
HELIX 21 369 27
COLOUR_TEXT_REGION 21 369 27 369 50
STRAND 11 374 14
COLOUR_TEXT_REGION 11 374 14 374 51
STRAND 36 374 42
COLOUR_TEXT_REGION 36 374 42 374 51
STRAND 51 374 55
COLOUR_TEXT_REGION 51 374 55 374 51
STRAND 67 374 72
COLOUR_TEXT_REGION 67 374 72 374 51
STRAND 77 374 82
COLOUR_TEXT_REGION 77 374 82 374 51
STRAND 85 374 90
COLOUR_TEXT_REGION 85 374 90 374 51
HELIX 21 374 27
COLOUR_TEXT_REGION 21 374 27 374 50
HELIX 64 374 64
COLOUR_TEXT_REGION 64 374 64 374 50
STRAND 11 375 14
COLOUR_TEXT_REGION 11 375 14 375 51
STRAND 36 375 42
COLOUR_TEXT_REGION 36 375 42 375 51
STRAND 52 375 56
COLOUR_TEXT_REGION 52 375 56 375 51
STRAND 68 375 71
COLOUR_TEXT_REGION 68 375 71 375 51
STRAND 76 375 82
COLOUR_TEXT_REGION 76 375 82 375 51
STRAND 85 375 91
COLOUR_TEXT_REGION 85 375 91 375 51
HELIX 21 375 27
COLOUR_TEXT_REGION 21 375 27 375 50
HELIX 66 375 66
COLOUR_TEXT_REGION 66 375 66 375 50